Mir-105-P1

MirGeneDB ID

Pab-Mir-105-P1

Family name

MIR-105 (all species)

Species

Sumatran orangutan (Pongo abelii)

MiRBase ID

Paralogues

Pab-Mir-105-P2

Orthologues

Bta-Mir-105-P1 Cfa-Mir-105-P1 Cja-Mir-105-P1 Cpo-Mir-105-P1 Eca-Mir-105-P1 Ete-Mir-105-P1 Hsa-Mir-105-P1 Mml-Mir-105-P1 Mmr-Mir-105-P1 Mmu-Mir-105-P1 Ocu-Mir-105-P1 Rno-Mir-105-P1

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)

CM054702.2: 158893390-158893448 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-105-P1)

Mir-105-P2 CM054702.2: 158891203-158891261 [-] UCSC Ensembl
Mir-105-P1 CM054702.2: 158893390-158893448 [-] UCSC Ensembl

Seed

CAAAUGC

Precursor
(pre-Mir +30nt flank)

UGUUGCAGAUCUUCUGUGUGUGCAUCGUGGUCAAAUGCUCAGACUCCUGUGGUGGCUGCUUAUGCACCACGGAUGUUUGAGCAUGUGCUAUGGUGUCUACUUUUGCAACAUUGCCAUCU

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Structure

        10          20        30        40        50         
UGUUGCAGAUCUUCUGU--|  U         U  A          UC        GCUG 
                   GUG GCAUCGUGG CA AUGCUCAGAC  CUGUGGUG    C
                   CAU UGUGGUAUC GU UACGAGUUUG  GGCACCAC    U
UCUACCGUUACAACGUUUU^  C         -  G          UA        GUAU 
       110       100        90         80        70        60

Deep sequencing

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3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Br	Li	Li

Mature sequence

Pab-Mir-105-P1_5p (predicted)

mirBase accession

None

Sequence

0- UCAAAUGCUCAGACUCCUGUGGUG -24

Get sequence

Star sequence

Pab-Mir-105-P1_3p*

mirBase accession

None

Sequence

36- CCACGGAUGUUUGAGCAUGUGCU -59

Get sequence