MirGeneDB ID | Ete-Mir-105-P1 |
Family name |
MIR-105 (all species) |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
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Paralogues |
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Orthologues |
Bta-Mir-105-P1
Cfa-Mir-105-P1
Cja-Mir-105-P1
Cpo-Mir-105-P1
Eca-Mir-105-P1
Hsa-Mir-105-P1
Mml-Mir-105-P1
Mmr-Mir-105-P1
Mmu-Mir-105-P1
Ocu-Mir-105-P1
Pab-Mir-105-P1
Rno-Mir-105-P1
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (echTel2) |
JH980398: 4387984-4388041 [+]
UCSC
|
Seed |
CAAAUGC |
Precursor (pre-Mir +30nt flank) |
CUUGAAAGAGCUUCUGUGUGUGCAUUGUGGUCAAAUGCUCAGACUCCUGUUGUGGCUGUUUGUGCACCAUGGAUUUUGAGCAUGUGCUAUGGCGUCUACUUCUGCAGCAUUGCAAUCU
Get precursor sequence
|
Structure | 10 20 30 40 50
CUUGAAAGAGCUUCUGU--| U A UG U A C - U GGCU
GUG GC U UGG CA AUGCUCAGA UCC UG UGU G
CAU UG G AUC GU UACGAGUUU AGG AC ACG U
UCUAACGUUACGACGUCUU^ C C GU - G U U C UGUU
110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ete-Mir-105-P1_5p (predicted) |
mirBase accession | None |
Sequence |
0- UCAAAUGCUCAGACUCCUGUUGUG -24
Get sequence
|
Star sequence |
Ete-Mir-105-P1_3p* (predicted) |
mirBase accession | None |
Sequence |
36- CCAUGGAUUUUGAGCAUGUGCU -58
Get sequence
|