MirGeneDB 3.0

MirGeneDB ID

Ete-Mir-105-P1

Family name MIR-105 (all species)
Species Lesser hedgehog tenrec (Echinops telfairi)
MiRBase ID
Paralogues
Orthologues Bta-Mir-105-P1  Cfa-Mir-105-P1  Cja-Mir-105-P1  Cpo-Mir-105-P1  Eca-Mir-105-P1  Hsa-Mir-105-P1  Mml-Mir-105-P1  Mmr-Mir-105-P1  Mmu-Mir-105-P1  Ocu-Mir-105-P1  Pab-Mir-105-P1  Rno-Mir-105-P1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(echTel2)
JH980398: 4387984-4388041 [+] UCSC
Seed CAAAUGC
Precursor
(pre-Mir +30nt flank)
CUUGAAAGAGCUUCUGUGUGUGCAUUGUGGUCAAAUGCUCAGACUCCUGUUGUGGCUGUUUGUGCACCAUGGAUUUUGAGCAUGUGCUAUGGCGUCUACUUCUGCAGCAUUGCAAUCU
Get precursor sequence
Structure
        10          20        30        40         50        
CUUGAAAGAGCUUCUGU--|  U  A UG   U  A         C   -  U   GGCU 
                   GUG GC U  UGG CA AUGCUCAGA UCC UG UGU    G
                   CAU UG G  AUC GU UACGAGUUU AGG AC ACG    U
UCUAACGUUACGACGUCUU^  C  C GU   -  G         U   U  C   UGUU 
      110       100        90         80        70        60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Ete-Mir-105-P1_5p (predicted)

mirBase accessionNone
Sequence
0- UCAAAUGCUCAGACUCCUGUUGUG -24
Get sequence
Star sequence

Ete-Mir-105-P1_3p* (predicted)

mirBase accessionNone
Sequence
36- CCAUGGAUUUUGAGCAUGUGCU -58
Get sequence