MirGeneDB 2.1

MirGeneDB ID

Mmu-Mir-540

Family name MIR-540 (all species)
Seed GGUCAGA
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-540
Paralogues
Orthologues Rno-Mir-540 
Node of Origin (locus) Muridae
Node of Origin (family) Muridae
Genome context
(mm10)
chr12: 109586085-109586143 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-540)
Mir-770 chr12: 109563710-109563765 [+] UCSC Ensembl
Mir-673 chr12: 109572004-109572066 [+] UCSC Ensembl
Mir-493 chr12: 109580243-109580305 [+] UCSC Ensembl
Mir-337-as chr12: 109585813-109585873 [-] UCSC Ensembl
Mir-337 chr12: 109585818-109585871 [+] UCSC Ensembl
Mir-540 chr12: 109586085-109586143 [+] UCSC Ensembl
Mir-431 chr12: 109590459-109590522 [+] UCSC Ensembl
Mir-433 chr12: 109591729-109591802 [+] UCSC Ensembl
Mir-127 chr12: 109592854-109592909 [+] UCSC Ensembl
Mir-136-v2 chr12: 109595331-109595386 [+] UCSC Ensembl
Mir-136-v1 chr12: 109595331-109595386 [+] UCSC Ensembl
Mir-370 chr12: 109618270-109618326 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCCUGGUGGGACAUUCCCUGGGGCUGGGCCAAGGGUCACCCUCUGACUCUGUGGCCAAGGGUAGACAGGUCAGAGGUCGAUCCUGGGCCUACUCUGGGGCUCCUCCCACUGGGAUUCC
Get precursor sequence
Structure
        10           20        30        40        50         
CCCCUGGUGGGACAUUC---| UG   C      A      AC        U    GGCCA 
                    CC  GGG UGGGCC AGGGUC  CCUCUGAC CUGU     A
                    GG  CUC AUCCGG UCCUAG  GGAGACUG GACA     G
CCUUAGGGUCACCCUCCUCG^ GU   -      G      CU        -    GAUGG 
       110       100         90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Star sequence

Mmu-Mir-540_5p*

mirBase accessionMIMAT0004786
Sequence
0- CAAGGGUCACCCUCUGACUCUGU -23
Get sequence
Proposed targets microrna.org: MIMAT0004786
TargetScanVert: mmu-miR-540-5p
miRDB: MIMAT0004786
Mature sequence

Mmu-Mir-540_3p

mirBase accessionMIMAT0003167
Sequence
37- AGGUCAGAGGUCGAUCCUGGGC -59
Get sequence
Proposed targets microrna.org: MIMAT0003167
TargetScanVert: mmu-miR-540-3p
miRDB: MIMAT0003167