MirGeneDB 3.0
MirGeneDB ID

Llo-Mir-2-o118

Family name MIR-2 (all species)
Species Bootlace worm (Lineus longissimus)
MiRBase ID
Paralogues Llo-Mir-2-o114-v1  Llo-Mir-2-o115  Llo-Mir-2-o116  Llo-Mir-2-o117  Llo-Mir-2-o119  Llo-Mir-2-o120  Llo-Mir-2-o121  Llo-Mir-2-P12 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) Lineidae
Node of Origin (family) Protostomia
Genome context
(GCA_910592395.2_tnLinLong1)		 OU343000.1: 4142445-4142502 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-o118)		 Mir-2-o121 OU343000.1: 4140571-4140629 [+] Ensembl
Mir-2-o120 OU343000.1: 4140870-4140930 [+] Ensembl
Mir-2-o119 OU343000.1: 4142150-4142210 [+] Ensembl
Mir-2-o118 OU343000.1: 4142445-4142502 [+] Ensembl
Seed AUCACAG
Precursor
(pre-Mir +30nt flank)		 
ACCCGCAUUUUGGUAGAAUCCCUGUCAAGUCCAUCACAGCGGUUGUGAUGUGCUAUAUGAAGACAUAUCACAGCCUGCUUUGAUGAGCUGGAUGGUUGGGUAAAACGUCAAUGGCAAG
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Structure
        10        20          30        40         50        
ACCCGCAUUUUGGUAGAA   --     A  UC     C   -|           CUAUA 
                  UCC  CUGUC AG  CAUCA AGC GGUUGUGAUGUG     \
                  GGG  GGUAG UC  GUAGU UCG CCGACACUAUAC     U
GAACGGUAACUGCAAAAU   UU     G  GA     U   U^           AGAAG 
      110       100        90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
No No No No No No
Star sequence

Llo-Mir-2-o118_5p* (predicted)
mirBase accessionNone
Sequence 
0- CCAUCACAGCGGUUGUGAUGUG -22
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Mature sequence

Llo-Mir-2-o118_3p
mirBase accessionNone
Sequence 
35- UAUCACAGCCUGCUUUGAUGAGC -58
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