MirGeneDB 3.0
MirGeneDB ID

Lan-Mir-2-o106a

Family name MIR-2 (all species)
Species Lingula (Lingula anatina)
MiRBase ID
Paralogues Lan-Mir-2-o100  Lan-Mir-2-o101a  Lan-Mir-2-o101b  Lan-Mir-2-o102  Lan-Mir-2-o103  Lan-Mir-2-o104  Lan-Mir-2-o105  Lan-Mir-2-o106b  Lan-Mir-2-o107  Lan-Mir-2-o108 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) L. anatina
Node of Origin (family) Protostomia
Genome context
(LinAna_1.0)		 LFEI01002046: 29074-29133 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-o106a)		 Mir-71-P4 LFEI01002046: 27476-27533 [+] Ensembl
Mir-2-o106a LFEI01002046: 29074-29133 [+] Ensembl
Mir-2-o101a LFEI01002046: 29414-29471 [+] Ensembl
Mir-2-o101b LFEI01002046: 29414-29471 [+] Ensembl
Mir-2-o107 LFEI01002046: 30083-30141 [+] Ensembl
Seed AUCACAG
Precursor
(pre-Mir +30nt flank)		 
AGUUGAGAUGAGACAAGUGUGUUGUGUGGCUGGUCAAAGUGGUUGUGACAGGGUGUGCUAGCUUUCCUAUCACAGCCUGCUUUGAUGAGCUAUACACAACACCAGACGACUGCCACUGGC
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Structure
        10        20          30        40         50         
AGUUGAGAUGAGACAAGU         --    G        -|       C   GUGUGC 
                  GUGUUGUGU  GGCU GUCAAAGU GGUUGUGA AGG      \
                  CACAACACA  UCGA UAGUUUCG CCGACACU UCC      U
CGGUCACCGUCAGCAGAC         UA    G        U^       A   UUUCGA 
.       110       100        90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
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Star sequence

Lan-Mir-2-o106a_5p* (predicted)
mirBase accessionNone
Sequence 
0- UGGUCAAAGUGGUUGUGACAGG -22
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Mature sequence

Lan-Mir-2-o106a_3p
mirBase accessionNone
Sequence 
37- UAUCACAGCCUGCUUUGAUGAGC -60
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