MirGeneDB 3.0
MirGeneDB ID

Lan-Mir-2-o108

Family name MIR-2 (all species)
Species Lingula (Lingula anatina)
MiRBase ID
Paralogues Lan-Mir-2-o100  Lan-Mir-2-o101a  Lan-Mir-2-o101b  Lan-Mir-2-o102  Lan-Mir-2-o103  Lan-Mir-2-o104  Lan-Mir-2-o105  Lan-Mir-2-o106a  Lan-Mir-2-o106b  Lan-Mir-2-o107 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) L. anatina
Node of Origin (family) Protostomia
Genome context
(LinAna_1.0)		 LFEI01000806: 164633-164697 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-o108)		 Mir-2-o104 LFEI01000806: 162292-162350 [+] Ensembl
Mir-2-o105 LFEI01000806: 164274-164333 [+] Ensembl
Mir-2-o108 LFEI01000806: 164633-164697 [+] Ensembl
Seed AUCACAG
Precursor
(pre-Mir +30nt flank)		 
ACGGGUUUGCUGAUACCAUGCAGUCCUCAUCCAUCAAAGUGGCUGUGAAGCAAUGAUAUUGUCUACUGUUGUAUCACAGCCCCGCUUUGAUGAGCUGAGAUUCUGCAGUCGUUCUACCAUAACCC
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Structure
        10        20         30         40          50        60 
ACGGGUUUGCUGAUACCA     UC-    UC-         --|       A   AUGAUAUU 
                  UGCAG   CUCA   CAUCAAAGU  GGCUGUGA GCA        \
                  ACGUC   GAGU   GUAGUUUCG  CCGACACU UGU        G
CCCAAUACCAUCUUGCUG     UUA    CGA         CC^       A   UGUCAUCU 
   120       110       100        90        80        70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsNo
Tissue expression
- +
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Star sequence

Lan-Mir-2-o108_5p* (predicted)
mirBase accessionNone
Sequence 
0- CCAUCAAAGUGGCUGUGAAGCA -22
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Mature sequence

Lan-Mir-2-o108_3p
mirBase accessionNone
Sequence 
41- UAUCACAGCCCCGCUUUGAUGAGC -65
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