MirGeneDB 3.0
MirGeneDB ID

Lan-Mir-2-o104

Family name MIR-2 (all species)
Species Lingula (Lingula anatina)
MiRBase ID
Paralogues Lan-Mir-2-o100  Lan-Mir-2-o101a  Lan-Mir-2-o101b  Lan-Mir-2-o102  Lan-Mir-2-o103  Lan-Mir-2-o105  Lan-Mir-2-o106a  Lan-Mir-2-o106b  Lan-Mir-2-o107  Lan-Mir-2-o108 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) L. anatina
Node of Origin (family) Protostomia
Genome context
(LinAna_1.0)		 LFEI01000806: 162292-162350 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-o104)		 Mir-2-o104 LFEI01000806: 162292-162350 [+] Ensembl
Mir-2-o105 LFEI01000806: 164274-164333 [+] Ensembl
Mir-2-o108 LFEI01000806: 164633-164697 [+] Ensembl
Seed AUCACAG
Precursor
(pre-Mir +30nt flank)		 
AUCUCUACCAUGUACCAGCUUGCUUUCUGUUCGUUUAAGGGGCUGUGAAAUGUUGAGUUGUUUUCAUAUCACAGCCCGCUUUGACGAGCUAGAGGGGAAGACCUGACCAACACUAUUUC
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Structure
        10         20         30         40        50        
AUCUCUACCAUGUACCAG-   G      -       U   -|        A   UUGAG 
                   CUU CUUUCU GUUCGUU AAG GGGCUGUGA AUG     U
                   GAA GGGAGA CGAGCAG UUC CCCGACACU UAC     U
CUUUAUCACAACCAGUCCA   G      U       U   G^        A   UUUUG 
       110       100        90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsNo
Tissue expression
- +
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Star sequence

Lan-Mir-2-o104_5p* (predicted)
mirBase accessionNone
Sequence 
0- UCGUUUAAGGGGCUGUGAAAUG -22
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Mature sequence

Lan-Mir-2-o104_3p
mirBase accessionNone
Sequence 
36- UAUCACAGCCCGCUUUGACGAGC -59
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