MirGeneDB 3.0
MirGeneDB ID

Lan-Mir-2-o101a

Family name MIR-2 (all species)
Species Lingula (Lingula anatina)
MiRBase ID
Paralogues Lan-Mir-2-o100  Lan-Mir-2-o101b  Lan-Mir-2-o102  Lan-Mir-2-o103  Lan-Mir-2-o104  Lan-Mir-2-o105  Lan-Mir-2-o106a  Lan-Mir-2-o106b  Lan-Mir-2-o107  Lan-Mir-2-o108 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) L. anatina
Node of Origin (family) Protostomia
Genome context
(LinAna_1.0)		 LFEI01002046: 29414-29471 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-o101a)		 Mir-71-P4 LFEI01002046: 27476-27533 [+] Ensembl
Mir-2-o106a LFEI01002046: 29074-29133 [+] Ensembl
Mir-2-o101a LFEI01002046: 29414-29471 [+] Ensembl
Mir-2-o101b LFEI01002046: 29414-29471 [+] Ensembl
Mir-2-o107 LFEI01002046: 30083-30141 [+] Ensembl
Seed AUCACAG
Precursor
(pre-Mir +30nt flank)		 
ACGUGCUGCCAUCUAUUGUGGGAGACCAGCCCUCAGAGCUUCCUGUGUUAUGUUGUUUUCUGUCAUAUCACAGCCUGCUUUGAUGAGCCGUUUUACCAUGCUGACUCUGUGAUUGUCU
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Structure
        10          20         30         40        50        
ACGUGCUGCCAUCUAUU--    -|    CA  CC-       UUC     U    UUGUU 
                   GUGG GAGAC  GC   UCAGAGC   CUGUG UAUG     \
                   UACC UUUUG  CG   AGUUUCG   GACAC AUAC     U
UCUGUUAGUGUCUCAGUCG    A^    C-  AGU       UCC     U    UGUCU 
      110       100        90         80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
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Star sequence

Lan-Mir-2-o101a_5p*
mirBase accessionNone
Sequence 
0- CCUCAGAGCUUCCUGUGUUAUG -22
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Mature sequence

Lan-Mir-2-o101a_3p
mirBase accessionNone
Sequence 
35- UAUCACAGCCUGCUUUGAUGAGC -58
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