Mir-210-P23

MirGeneDB ID

Hru-Mir-210-P23

Family name

MIR-210 (all species)

Species

Red Abalone (Haliotis rufescens)

MiRBase ID

Paralogues

Hru-Mir-210-P24

Orthologues

Aca-Mir-210 Agr-Mir-210 Ami-Mir-210 Bfl-Mir-210 Bla-Mir-210 Bta-Mir-210 Cfa-Mir-210 Cja-Mir-210 Cli-Mir-210 Cmi-Mir-210 Cpi-Mir-210 Cpo-Mir-210 Dgr-Mir-210 Dma-Mir-210 Dno-Mir-210 Dpu-Mir-210 Dre-Mir-210 Eba-Mir-210 Ebu-Mir-210 Eca-Mir-210 Egr-Mir-210 Ete-Mir-210 Gga-Mir-210 Gja-Mir-210 Gmo-Mir-210 Hsa-Mir-210 Isc-Mir-210 Lan-Mir-210 Lch-Mir-210 Lgi-Mir-210 Lhy-Mir-210 Llo-Mir-210 Loc-Mir-210 Mal-Mir-210 Mdo-Mir-210 Mgi-Mir-210 Mml-Mir-210 Mmr-Mir-210 Mmu-Mir-210 Mom-Mir-210 Mun-Mir-210 Neu-Mir-210 Npo-Mir-210 Oan-Mir-210 Ocu-Mir-210 Ofu-Mir-210 Pab-Mir-210 Pau-Mir-210 Pbv-Mir-210 Pca-Mir-210 Pma-Mir-210 Rno-Mir-210 Sha-Mir-210 Sko-Mir-210 Sma-Mir-210 Snu-Mir-210 Spt-Mir-210 Tgu-Mir-210 Tni-Mir-210 War-Mir-210 Xtr-Mir-210

Node of Origin (locus)

H. rufescens

Node of Origin (family)

Bilateria

Genome context
(GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces)

JALGQA010000006.1: 28697465-28697524 [+] UCSC Ensembl

Seed

UGUGCGU

Precursor
(pre-Mir +30nt flank)

UGAAGUUACUGUUAACAAAUGUCGCAUGUCUGUUGCUGUGUCACGAUACAAGAAGAAGAAAUGAUUUCUUGUGCGUGUCACAGUAACAAAACAUGGUCAUAUAGAACGUCUCGAUUGAAG

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Structure

        10          20        30         40        50          
UGAAGUUACUGUUAACAA--|  UCG     C-          U    A       AGAAGA 
                    AUG   CAUGU  UGUUGCUGUG CACG UACAAGA      \
                    UAC   GUACA  ACAAUGACAC GUGC GUGUUCU      A
GAAGUUAGCUCUGCAAGAUA^  UG-     AA          U    -       UUAGUA 
.       110       100         90        80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To	To

Star sequence

Hru-Mir-210-P23_5p* (predicted)

mirBase accession

None

Sequence

0- UGUUGCUGUGUCACGAUACAAGA -23

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Mature sequence

Hru-Mir-210-P23_3p

mirBase accession

None

Sequence

38- UUGUGCGUGUCACAGUAACAAA -60

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