| MirGeneDB ID | Dre-Mir-2188 |
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| Family name |
MIR-2188 (all species) |
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| Species |
Zebrafish (Danio rerio) |
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| MiRBase ID |
dre-mir-2188
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| Paralogues |
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| Orthologues |
Aca-Mir-2188
Ami-Mir-2188
Cli-Mir-2188
Cmi-Mir-2188
Cpi-Mir-2188
Gga-Mir-2188
Gja-Mir-2188
Gmo-Mir-2188
Lch-Mir-2188
Loc-Mir-2188
Mal-Mir-2188
Mdo-Mir-2188
Mun-Mir-2188
Oan-Mir-2188
Pbv-Mir-2188
Sha-Mir-2188
Spt-Mir-2188
Sto-Mir-2188
Tgu-Mir-2188
Tni-Mir-2188
Xla-Mir-2188-P1
Xla-Mir-2188-P2
Xtr-Mir-2188
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| Node of Origin (locus) |
Gnathostomata
|
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| Node of Origin (family) |
Gnathostomata
|
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Genome context
(danRer11) |
chr5: 69021881-69021940 [-]
UCSC
Ensembl
|
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| Seed |
AGGUCCA |
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Precursor
(pre-Mir +30nt flank) |
UCAGACGGGGACAAUAUCAGCAAUGUGAGAAAGGUCCAACCUCACAUGUCCUGUGAGGCUGAAGGAAGGCUGUGUGAGGUUAGACCUAUCCCACACGGCCCGUAUUCUUCCCUGCACUGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UCAGACGGGGACAAUAUCA--| AA A A C U GUGAGG
GC UGUG GA AGGUC AACCUCACAUG CCU C
CG ACAC CU UCCAG UUGGAGUGUGU GGA U
AGUCACGUCCCUUCUUAUGCC^ GC C A A C AGGAAG
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Yes
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
| Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
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| Mature sequence |
Dre-Mir-2188_5p |
| mirBase accession | MIMAT0011309 |
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| Sequence |
0- AAGGUCCAACCUCACAUGUCCU -22
Get sequence
|
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| Proposed targets |
TargetScanFish: dre-miR-2188
|
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| Star sequence |
Dre-Mir-2188_3p* |
| mirBase accession | MIMAT0011310 |
|---|
| Sequence |
38- GCUGUGUGAGGUUAGACCUAUC -60
Get sequence
|
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