| MirGeneDB ID | Xtr-Mir-2188 |
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| Family name |
MIR-2188 (all species) |
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| Species |
Tropical clawed frog (Xenopus tropicalis) |
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| MiRBase ID |
xtr-mir-2188
|
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| Paralogues |
|
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| Orthologues |
Aca-Mir-2188
Ami-Mir-2188
Cli-Mir-2188
Cmi-Mir-2188
Cpi-Mir-2188
Dre-Mir-2188
Gga-Mir-2188
Gja-Mir-2188
Gmo-Mir-2188
Lch-Mir-2188
Loc-Mir-2188
Mal-Mir-2188
Mdo-Mir-2188
Mun-Mir-2188
Oan-Mir-2188
Pbv-Mir-2188
Sha-Mir-2188
Spt-Mir-2188
Sto-Mir-2188
Tgu-Mir-2188
Tni-Mir-2188
Xla-Mir-2188-P1
Xla-Mir-2188-P2
|
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| Node of Origin (locus) |
Gnathostomata
|
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| Node of Origin (family) |
Gnathostomata
|
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Genome context
(xenTro9_add) |
chr3: 120050654-120050711 [-]
UCSC
Ensembl
|
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| Seed |
AGGUCCA |
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Precursor
(pre-Mir +30nt flank) |
GGUCCUCUGGAGAAUAUCGGGCGUGUGGGAAAGGUCCAGCCUCAUAUGUCCUGUGAUCCUGAGGGGGAGAUAUGUGGUCAGACCUGUCCCACAGGCCGUGUAUUCUACCCUGACCUCA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GGUCCUCUGGAGAAUAUCG--| G A CA U G GUGAU
GGC UGUGGGA AGGUC GCC CAUAU UCCU C
CCG ACACCCU UCCAG UGG GUAUA AGGG C
ACUCCAGUCCCAUCUUAUGUG^ G G AC U G GGAGU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Dicer cut -1 on both arms. |
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| 3' NTU |
Yes
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Xtr-Mir-2188_5p |
| mirBase accession | MIMAT0012193 |
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| Sequence |
0- AAGGUCCAGCCUCAUAUGUCCU -22
Get sequence
|
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| Proposed targets |
TargetScanVert: xtr-miR-2188
|
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| Star sequence |
Xtr-Mir-2188_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- GAGAUAUGUGGUCAGACCUGUC -58
Get sequence
|
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