MirGeneDB 2.1

MirGeneDB ID

Spt-Mir-2188

Family name MIR-2188 (all species)
Seed AGGUCCA
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-2188  Ami-Mir-2188  Cli-Mir-2188  Cmi-Mir-2188  Cpi-Mir-2188  Dre-Mir-2188  Gga-Mir-2188  Gja-Mir-2188  Gmo-Mir-2188  Lch-Mir-2188  Loc-Mir-2188  Mal-Mir-2188  Mdo-Mir-2188  Mun-Mir-2188  Oan-Mir-2188  Pbv-Mir-2188  Sha-Mir-2188  Sto-Mir-2188  Tgu-Mir-2188  Tni-Mir-2188  Xla-Mir-2188-P1  Xla-Mir-2188-P2  Xtr-Mir-2188 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)
QEPC01010930.1: 773536-773595 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCCAUCCUGGGGAAUAUCAGACCUUUGGGAAAGGUCCAACCUCACAUGUCCUGUAUGUGAUGAAGAGGGAUAUAUGUGGUCAGACCUAUCUCACAGGCCCUGUAUUCUUUCACAAAUGCA
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Structure
        10         20         30        40        50         
UCCAUCCUGGGGAAUAU-   A-|  U     A     CA   U  C       GUAUGU 
                  CAG  CCU UGGGA AGGUC  ACC CA AUGUCCU      G
                  GUC  GGA ACUCU UCCAG  UGG GU UAUAGGG      A
ACGUAAACACUUUCUUAU   CC^  C     A     AC   U  A       AGAAGU 
.       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsNo
Mature sequence

Spt-Mir-2188_5p (predicted)

mirBase accessionNone
Sequence
0- AAGGUCCAACCUCACAUGUCCU -22
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Star sequence

Spt-Mir-2188_3p* (predicted)

mirBase accessionNone
Sequence
38- GAUAUAUGUGGUCAGACCUAUC -60
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