MirGeneDB 2.1
MirGeneDB ID

Mal-Mir-2188

Family name MIR-2188 (all species)
Seed AGGUCCA
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-2188  Ami-Mir-2188  Cli-Mir-2188  Cmi-Mir-2188  Cpi-Mir-2188  Dre-Mir-2188  Gga-Mir-2188  Gja-Mir-2188  Gmo-Mir-2188  Lch-Mir-2188  Loc-Mir-2188  Mdo-Mir-2188  Mun-Mir-2188  Oan-Mir-2188  Pbv-Mir-2188  Sha-Mir-2188  Spt-Mir-2188  Sto-Mir-2188  Tgu-Mir-2188  Tni-Mir-2188  Xla-Mir-2188-P1  Xla-Mir-2188-P2  Xtr-Mir-2188 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)		 KV884744.1: 2550294-2550353 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACUCAGAGGAAUAAUAUCAGUGGUGUGGGAAAGGUCCAACCUCACAUGUCCUGUGCGGCUGAAGGAAGGCUGUGUGAGGUCAGACCUAUCCCACACGGCUCUUAUUCUUCCCAGCCAUGA
Get precursor sequence
Structure
        10          20        30        40        50         
ACUCAGAGGAAUAAUAUC--|  G        A     CA          U   GUGCGG 
                    AGU GUGUGGGA AGGUC  ACCUCACAUG CCU      C
                    UCG CACACCCU UCCAG  UGGAGUGUGU GGA      U
AGUACCGACCCUUCUUAUUC^  G        A     AC          C   AGGAAG 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-2188_5p
mirBase accessionNone
Sequence 
0- AAGGUCCAACCUCACAUGUCCU -22
Get sequence
Star sequence

Mal-Mir-2188_3p*
mirBase accessionNone
Sequence 
38- GCUGUGUGAGGUCAGACCUAUC -60
Get sequence