MirGeneDB 2.1

MirGeneDB ID

Xla-Mir-2188-P1

Family name MIR-2188 (all species)
Seed AGGUCCA
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-2188-P2 
Orthologues Aca-Mir-2188  Ami-Mir-2188  Cli-Mir-2188  Cmi-Mir-2188  Cpi-Mir-2188  Dre-Mir-2188  Gga-Mir-2188  Gja-Mir-2188  Gmo-Mir-2188  Lch-Mir-2188  Loc-Mir-2188  Mal-Mir-2188  Mdo-Mir-2188  Mun-Mir-2188  Oan-Mir-2188  Pbv-Mir-2188  Sha-Mir-2188  Spt-Mir-2188  Sto-Mir-2188  Tgu-Mir-2188  Tni-Mir-2188  Xtr-Mir-2188 
Node of Origin (locus) X. laevis
Node of Origin (family) Gnathostomata
Genome context
(GCF_001663975.1_XLA_v2)
NC_030728.1: 123489911-123489968 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGUCCUCUGGAGAAUAUCGGGCGUGUGGGAAAGGUCCAGCCUCAUAUGUCCUGUGAUCCUGAGGGGGAGAUAUGUGGUCAGACCUGUCCCACAGGUCGUGUAUUCUACCCUGACCUCA
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Structure
        10          20        30        40        50        
GGUCCUCUGGAGAAUAUCG--|  G       A     CA   U     G    GUGAU 
                     GGC UGUGGGA AGGUC  GCC CAUAU UCCU     C
                     CUG ACACCCU UCCAG  UGG GUAUA AGGG     C
ACUCCAGUCCCAUCUUAUGUG^  G       G     AC   U     G    GGAGU 
      110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Eg He Re St St St St
Mature sequence

Xla-Mir-2188-P1_5p

mirBase accessionNone
Sequence
0- AAGGUCCAGCCUCAUAUGUCCU -22
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Star sequence

Xla-Mir-2188-P1_3p* (predicted)

mirBase accessionNone
Sequence
36- GAGAUAUGUGGUCAGACCUGUC -58
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