Mir-142-P2-v2

MirGeneDB ID

Dre-Mir-142-P2

Family name

MIR-142 (all species)

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-142a

Paralogues

Dre-Mir-142-P2-v1 Dre-Mir-142-P4-v1

Orthologues

Ami-Mir-142-P2-v1 Bta-Mir-142-P2-v1 Cfa-Mir-142-P2-v1 Cja-Mir-142-P2-v1 Cli-Mir-142-P2-v1 Cmi-Mir-142-P2-v1 Cpi-Mir-142-P2-v1 Cpo-Mir-142-P2-v1 Dno-Mir-142-P2-v1 Eca-Mir-142-P2-v1 Ete-Mir-142-P2-v1 Gga-Mir-142-P2-v1 Gmo-Mir-142-P2-v1 Hsa-Mir-142-P2-v1 Lch-Mir-142-P2 Loc-Mir-142-P2-v1 Mal-Mir-142-P2-v1 Mdo-Mir-142-P2-v1 Mml-Mir-142-P2-v1 Mmr-Mir-142-P2-v1 Mmu-Mir-142-P2-v1 Neu-Mir-142-P2-v1 Oan-Mir-142-P2-v1 Ocu-Mir-142-P2-v1 Pab-Mir-142-P2-v1 Rno-Mir-142-P2-v1 Sha-Mir-142-P2-v1 Spt-Mir-142-P2 Sto-Mir-142-P2-v1 Tgu-Mir-142-P2-v1 Tni-Mir-142-P2-v1 Xla-Mir-142-P2a1-v1 Xla-Mir-142-P2a2-v1 Xla-Mir-142-P2b1-v1 Xla-Mir-142-P2b2-v1 Xtr-Mir-142-P2a-v1 Xtr-Mir-142-P2b-v1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(danRer11)

chr5: 3170753-3170812 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-142-P2-v2)

Mir-142-P2-v4 chr5: 3170751-3170814 [+] UCSC Ensembl
Mir-142-P2-v1 chr5: 3170753-3170812 [+] UCSC Ensembl
Mir-142-P2-v2 chr5: 3170753-3170812 [+] UCSC Ensembl
Mir-142-P2-v3 chr5: 3170753-3170812 [+] UCSC Ensembl

Variant

Dre-Mir-142-P2-v2

Seed

AUAAAGU

Precursor
(pre-Mir +30nt flank)

CAGGACAAAAGGACGUACAGUGCAGUCAUCCAUAAAGUAGAAAGCACUACUAAACCCCUCGCCACAGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUUGGCUGCUGGGAACACUU

Get precursor sequence

Structure

        10          20        30        40        50         
CAGGACAAAAGGACGUA--|      G               A         UAAACCCC 
                   CAGUGCA UCAUCCAUAAAGUAG AAGCACUAC        U
                   GUCAUGU AGUAGGUAUUUCAUC UUUGUGAUG        C
UUCACAAGGGUCGUCGGUU^      G               C         UGACACCG 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-142-P2-v2_5p

mirBase accession

MIMAT0001838

Sequence

0- CAUAAAGUAGAAAGCACUACUA -22

Get sequence

Proposed targets

TargetScanFish: dre-miR-142a-5p

Co-mature sequence

Dre-Mir-142-P2-v2_3p

mirBase accession

MIMAT0003160

Sequence

38- GUAGUGUUUCCUACUUUAUGGA -60

Get sequence

Proposed targets

TargetScanFish: dre-miR-142a-3p

Variant

Dre-Mir-142-P2-v1

Seed

AUAAAGU

Precursor
(pre-Mir +30nt flank)

CAGGACAAAAGGACGUACAGUGCAGUCAUCCAUAAAGUAGAAAGCACUACUAAACCCCUCGCCACAGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUUGGCUGCUGGGAACACUU

Get precursor sequence

Structure

        10          20        30        40        50         
CAGGACAAAAGGACGUA--|      G               A         UAAACCCC 
                   CAGUGCA UCAUCCAUAAAGUAG AAGCACUAC        U
                   GUCAUGU AGUAGGUAUUUCAUC UUUGUGAUG        C
UUCACAAGGGUCGUCGGUU^      G               C         UGACACCG 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-142-P2-v1_5p

mirBase accession

MIMAT0001838

Sequence

0- CAUAAAGUAGAAAGCACUACU -21

Get sequence

Proposed targets

TargetScanFish: dre-miR-142a-5p

Star sequence

Dre-Mir-142-P2-v1_3p*

mirBase accession

MIMAT0003160

Sequence

39- UAGUGUUUCCUACUUUAUGGA -60

Get sequence

Proposed targets

TargetScanFish: dre-miR-142a-3p

Variant

Dre-Mir-142-P2-v3

Seed

GUAGUGU

Precursor
(pre-Mir +30nt flank)

CAGGACAAAAGGACGUACAGUGCAGUCAUCCAUAAAGUAGAAAGCACUACUAAACCCCUCGCCACAGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUUGGCUGCUGGGAACACUU

Get precursor sequence

Structure

        10          20        30        40        50         
CAGGACAAAAGGACGUA--|      G               A         UAAACCCC 
                   CAGUGCA UCAUCCAUAAAGUAG AAGCACUAC        U
                   GUCAUGU AGUAGGUAUUUCAUC UUUGUGAUG        C
UUCACAAGGGUCGUCGGUU^      G               C         UGACACCG 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Star sequence

Dre-Mir-142-P2-v3_5p*

mirBase accession

MIMAT0001838

Sequence

0- CAUAAAGUAGAAAGCACUACUAA -23

Get sequence

Proposed targets

TargetScanFish: dre-miR-142a-5p

Mature sequence

Dre-Mir-142-P2-v3_3p

mirBase accession

MIMAT0003160

Sequence

37- UGUAGUGUUUCCUACUUUAUGGA -60

Get sequence

Proposed targets

TargetScanFish: dre-miR-142a-3p

Variant

Dre-Mir-142-P2-v4

Seed

CCAUAAA

Precursor
(pre-Mir +30nt flank)

AUCAGGACAAAAGGACGUACAGUGCAGUCAUCCAUAAAGUAGAAAGCACUACUAAACCCCUCGCCACAGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUUGGCUGCUGGGAACACUUCG

Get precursor sequence

Structure

        10          20        30        40        50        60 
AUCAGGACAAAAGGACGU--|       G               A         UAAACCCC 
                    ACAGUGCA UCAUCCAUAAAGUAG AAGCACUAC        U
                    UGUCAUGU AGUAGGUAUUUCAUC UUUGUGAUG        C
GCUUCACAAGGGUCGUCGGU^       G               C         UGACACCG 
  120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-142-P2-v4_5p

mirBase accession

MIMAT0001838

Sequence

0- UCCAUAAAGUAGAAAGCACUAC -22

Get sequence

Proposed targets

TargetScanFish: dre-miR-142a-5p

Star sequence

Dre-Mir-142-P2-v4_3p*

mirBase accession

MIMAT0003160

Sequence

42- AGUGUUUCCUACUUUAUGGAUG -64

Get sequence

Proposed targets

TargetScanFish: dre-miR-142a-3p