Mir-975

MirGeneDB ID

Dme-Mir-975

Family name

MIR-975 (all species)

Species

Fruit fly (Drosophila melanogaster)

MiRBase ID

dme-mir-975

Paralogues

Orthologues

Dan-Mir-975 Dmo-Mir-975 Dsi-Mir-975 Dya-Mir-975

Node of Origin (locus)

Drosophila

Node of Origin (family)

Drosophila

Genome context
(Drosophila_melanogaster_BDGP6)

X: 19558768-19558828 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-975)

Mir-972 X: 19551171-19551226 [+] UCSC Ensembl
Mir-973 X: 19551546-19551611 [+] UCSC Ensembl
Mir-974 X: 19551702-19551763 [+] UCSC Ensembl
Mir-2499 X: 19557029-19557090 [+] UCSC Ensembl
Mir-975 X: 19558768-19558828 [+] UCSC Ensembl
Mir-976 X: 19558917-19558975 [+] UCSC Ensembl
Mir-977 X: 19559046-19559108 [+] UCSC Ensembl
Mir-978-v1 X: 19561251-19561313 [+] UCSC Ensembl
Mir-978-v2 X: 19561252-19561312 [+] UCSC Ensembl

Seed

AAACACU

Precursor
(pre-Mir +30nt flank)

AUCCAAUUGGCAAUAUUGAAUUUUUGAUUUUAAACACUUCCUACAUCCUGUAUGUGUUUUGCAUCCGGUACAGAUGUGGGAGUCGUUUGCACUCAGAGAUUUCACAGAAUUCGAGGAUCGA

Get precursor sequence

Structure

        10          20        30         40        50        60
AUCCAAUUGGCAAUAUU--          UUU     -|  U        C     GUGUUU 
                   GAAUUUUUGA   UAAAC ACU CCUACAUC UGUAU      U
                   UUUAGAGACU   GUUUG UGA GGGUGUAG ACAUG      G
AGCUAGGAGCUUAAGACAC          CAC     C^  -        -     GCCUAC 
 .       110       100        90         80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), UGUG in loop

Tissue expression

Bo	He	He	La	Ov	Sa	Wh

Mature sequence

Dme-Mir-975_5p

mirBase accession

MIMAT0005491

Sequence

0- UAAACACUUCCUACAUCCUGUAU -23

Get sequence

Proposed targets

microrna.org: MIMAT0005491
TargetScanFly: dme-miR-975

Star sequence

Dme-Mir-975_3p*

mirBase accession

MIMAT0020872

Sequence

39- ACAGAUGUGGGAGUCGUUUGCA -61

Get sequence