Mir-2499

MirGeneDB ID

Dme-Mir-2499

Family name

MIR-2499 (all species)

Species

Fruit fly (Drosophila melanogaster)

MiRBase ID

dme-mir-2499

Paralogues

Orthologues

Node of Origin (locus)

D. melanogaster

Node of Origin (family)

D. melanogaster

Genome context
(Drosophila_melanogaster_BDGP6)

X: 19557029-19557090 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-2499)

Mir-972 X: 19551171-19551226 [+] UCSC Ensembl
Mir-973 X: 19551546-19551611 [+] UCSC Ensembl
Mir-974 X: 19551702-19551763 [+] UCSC Ensembl
Mir-2499 X: 19557029-19557090 [+] UCSC Ensembl
Mir-975 X: 19558768-19558828 [+] UCSC Ensembl
Mir-976 X: 19558917-19558975 [+] UCSC Ensembl
Mir-977 X: 19559046-19559108 [+] UCSC Ensembl
Mir-978-v1 X: 19561251-19561313 [+] UCSC Ensembl
Mir-978-v2 X: 19561252-19561312 [+] UCSC Ensembl

Seed

UGCGGAU

Precursor
(pre-Mir +30nt flank)

GCGUUCGCCUCCUUGCUGUGGGUGUGGUUGCGUGCGUAGACGUCAGCGCAAUGCCUUUGUUUGGCGGCAUGCGGAUGACAUUCACGUCCGUAUCCGCACACACAUCCGCAUCCAUAUAUCCG

Get precursor sequence

Structure

        10          20        30        40         50        60
GCGUUCGCCUCCUUGCU--   G      U    UG   AG C    G-|   A   CUUUG 
                   GUG GUGUGG UGCG  CGU  A GUCA  CGCA UGC     U
                   CAC CACGCC AUGC  GCA  U CAGU  GCGU ACG     U
GCCUAUAUACCUACGCCUA   A      U    CU   CU A    AG^   -   GCGGU 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bo	He	He	La	Ov	Sa	Wh

Star sequence

Dme-Mir-2499_5p*

mirBase accession

MIMAT0012212

Sequence

0- CGUGCGUAGACGUCAGCGCAAUGC -24

Get sequence

Proposed targets

microrna.org: MIMAT0012212

Mature sequence

Dme-Mir-2499_3p

mirBase accession

MIMAT0012213

Sequence

38- AUGCGGAUGACAUUCACGUCCGUA -62

Get sequence

Proposed targets

microrna.org: MIMAT0012213