MirGeneDB

MirGeneDB ID

Dme-Mir-964-v1

Family name MIR-964 (all species)
Seed UAGAAUA
Species Fruit fly (Drosophila melanogaster)
MiRBase ID dme-mir-964
Paralogues Dme-Mir-964-v2 
Orthologues Dan-Mir-964  Dmo-Mir-964 
Node of Origin (locus) Drosophila
Node of Origin (family) Drosophila
Genome context
(dm6)
chr2L: 5642127-5642187 [+] UCSC Ensembl
Clustered MiRNAs
(< 10kb from Mir-964-v1)
Mir-959-v1 chr2L: 5640958-5641021 [+] UCSC Ensembl
Mir-959-v2 chr2L: 5640959-5641020 [+] UCSC Ensembl
Mir-960 chr2L: 5641081-5641140 [+] UCSC Ensembl
Mir-961 chr2L: 5641208-5641266 [+] UCSC Ensembl
Mir-962 chr2L: 5641315-5641374 [+] UCSC Ensembl
Mir-963 chr2L: 5642005-5642064 [+] UCSC Ensembl
Mir-964-v1 chr2L: 5642127-5642187 [+] UCSC Ensembl
Mir-964-v2 chr2L: 5642128-5642186 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAUACCAAUAACAUAUUGGUCCAACUUGCCUUAGAAUAGGGGAGCUUAACUUAUGUUUUUGAUGUUUAAGUUAAAAGCCUCUGUUCUAAGACAAUUUGAUGAUCAAAACAGCCGGAGAAAU
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Structure
        10        20          30        40        50          
GAUACCAAUAACAUAUUGGUC--|  C   C             AGC       AUGUUUU 
                       CAA UUG CUUAGAAUAGGGG   UUAACUU       \
                       GUU AAC GAAUCUUGUCUCC   AAUUGAA       U
UAAAGAGGCCGACAAAACUAGUA^  U   A             GAA       UUUGUAG 
 .       110       100        90        80        70
Deep sequencing
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CommentThere is a second Dicer site -1 relative to what is annotated here.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Bo He L3 Fe Fe La Wh
Mature sequence

Dme-Mir-964-v1_5p

MirBase accessionMIMAT0005478
Sequence
0- UUAGAAUAGGGGAGCUUAACUU -22
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Validated targets microrna.org: MIMAT0005478
TargetScanFly: dme-miR-964
Star sequence

Dme-Mir-964-v1_3p*

MirBase accessionMIMAT0020859
Sequence
39- GUUAAAAGCCUCUGUUCUAAGA -61
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