MirGeneDB 2.1

MirGeneDB ID

Dan-Mir-963

Family name MIR-963 (all species)
Seed CAAGGUA
Species Fruit fly (Drosophila ananassae)
MiRBase ID
Paralogues
Orthologues Dme-Mir-963-v1  Dme-Mir-963-v2  Dmo-Mir-963-v1  Dmo-Mir-963-v2  Dsi-Mir-963  Dya-Mir-963 
Node of Origin (locus) Drosophila
Node of Origin (family) Drosophila
Genome context
(Dana_caf1)
scaffold_12916: 11085461-11085523 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGUUAAAAAGUGUUCUUGAUUUAAUCUAAAACAAGGUACAUAUCUGGUUGUUUCCUAUAUUCAAAGUUUGAAACAUCUGUAUCUACCUUUGUUUCGAUUAAACUAAAGAGCUACUAAGAAUAC
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Structure
        10          20        30         40        50        60  
AGUUAAAAAGUGUUCUUGA--|      UA      -    C    CU  U      CUAUAUU 
                     UUUAAUC  AAACAA GGUA AUAU  GG UGUUUC       \
                     AAAUUAG  UUUGUU CCAU UAUG  UC ACAAAG       C
CAUAAGAAUCAUCGAGAAAUC^      C-      U    C    --  U      UUUGAAA 
 120       110       100         90        80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Da
Mature sequence

Dan-Mir-963_5p

mirBase accessionNone
Sequence
0- ACAAGGUACAUAUCUGGUUGUUUC -24
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Star sequence

Dan-Mir-963_3p*

mirBase accessionNone
Sequence
41- AACAUCUGUAUCUACCUUUGUU -63
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