MirGeneDB 3.0

MirGeneDB ID

Dmo-Mir-963

Family name MIR-963 (all species)
Species Fruit fly (Drosophila mojavensis)
MiRBase ID
Paralogues
Orthologues Dan-Mir-963  Dme-Mir-963-v1  Dsi-Mir-963  Dya-Mir-963 
Node of Origin (locus) Drosophila
Node of Origin (family) Drosophila
Genome context
(Dmoj_caf1)
scaffold_6500: 14019392-14019454 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-963-v1)
Mir-960 scaffold_6500: 14018218-14018275 [+] Ensembl
Mir-962 scaffold_6500: 14018377-14018449 [+] Ensembl
Mir-963-v2 scaffold_6500: 14019391-14019455 [+] Ensembl
Mir-963-v1 scaffold_6500: 14019392-14019454 [+] Ensembl
Mir-964 scaffold_6500: 14019536-14019594 [+] Ensembl
Variant

Dmo-Mir-963-v1

Seed CAAGGUA
Precursor
(pre-Mir +30nt flank)
GGAGUGCGCACUGAAUCGGUCUAAUCUAAAACAAGGUACAUAUCAGAGUGUUUCCCGUAUUCGAGUUUUGAAACCUCUGUAUAUACCUUUCAUUAGAUUCAACCGAAAGUCCAUAAAUAUUGA
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Structure
        10          20        30        40        50        60  
GGAGUGCGCACUGAAUC--|  CU       AAC      C   U     U     CCGUAUU 
                   GGU  AAUCUAA   AAGGUA AUA CAGAG GUUUC       \
                   CCA  UUAGAUU   UUCCAU UAU GUCUC CAAAG       C
AGUUAUAAAUACCUGAAAG^  AC       ACU      A   -     -     UUUUGAG 
 120       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsNo
Tissue expression
- +
Em Fe Ma Ma
Mature sequence

Dmo-Mir-963-v1_5p

mirBase accessionNone
Sequence
0- ACAAGGUACAUAUCAGAGUGUUUC -24
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Star sequence

Dmo-Mir-963-v1_3p*

mirBase accessionNone
Sequence
41- AACCUCUGUAUAUACCUUUCAU -63
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Variant

Dmo-Mir-963-v2

Seed ACAAGGU
Precursor
(pre-Mir +30nt flank)
UGGAGUGCGCACUGAAUCGGUCUAAUCUAAAACAAGGUACAUAUCAGAGUGUUUCCCGUAUUCGAGUUUUGAAACCUCUGUAUAUACCUUUCAUUAGAUUCAACCGAAAGUCCAUAAAUAUUGAU
Get precursor sequence
Structure
        10          20        30        40        50        60   
UGGAGUGCGCACUGAAU--|   CU       AAC      C   U     U    CCCGUAUU 
                   CGGU  AAUCUAA   AAGGUA AUA CAGAG GUUU        \
                   GCCA  UUAGAUU   UUCCAU UAU GUCUC CAAA        C
UAGUUAUAAAUACCUGAAA^   AC       ACU      A   -     -    GUUUUGAG 
   120       110       100        90         80         70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsNo
Tissue expression
- +
Em Fe Ma Ma
Mature sequence

Dmo-Mir-963-v2_5p

mirBase accessionNone
Sequence
0- AACAAGGUACAUAUCAGAGUGUUU -24
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Star sequence

Dmo-Mir-963-v2_3p*

mirBase accessionNone
Sequence
43- ACCUCUGUAUAUACCUUUCAUU -65
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