Mir-963

MirGeneDB ID

Dsi-Mir-963

Family name

MIR-963 (all species)

Species

Fruit fly (Drosophila simulans)

MiRBase ID

dsi-mir-963

Paralogues

Orthologues

Dan-Mir-963 Dme-Mir-963-v1 Dmo-Mir-963-v1 Dya-Mir-963

Node of Origin (locus)

Drosophila

Node of Origin (family)

Drosophila

Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)

2L: 5446636-5446695 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-963)

Mir-959-v1 2L: 5445611-5445674 [+] UCSC Ensembl
Mir-959-v2 2L: 5445612-5445673 [+] UCSC Ensembl
Mir-960 2L: 5445734-5445793 [+] UCSC Ensembl
Mir-961 2L: 5445861-5445919 [+] UCSC Ensembl
Mir-962 2L: 5445969-5446028 [+] UCSC Ensembl
Mir-963 2L: 5446636-5446695 [+] UCSC Ensembl
Mir-964-v1 2L: 5446777-5446837 [+] UCSC Ensembl
Mir-964-v2 2L: 5446778-5446836 [+] UCSC Ensembl

Seed

CAAGGUA

Precursor
(pre-Mir +30nt flank)

UUACUACUGAUUUUCUUAGUCUAAUCUAAAACAAGGUAAAUAUCAGGUUGUUUCCUGUAUUAGAUCGAAACAUCUGUAUAUACCUUUGAUCCGGUUGGACAAAAGUGCAUCUUCUAGUGG

Get precursor sequence

Structure

        10          20        30        40        50        60
UUACUACUGAUUUUCUUA--|       UAAAAC      A   U     U     CUGUA 
                    GUCUAAUC      AAGGUA AUA CAGGU GUUUC     U
                    CAGGUUGG      UUCCAU UAU GUCUA CAAAG     U
GGUGAUCUUCUACGUGAAAA^       CCUAGU      A   -     -     CUAGA 
.       110       100        90        80          70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

He	Wh

Mature sequence

Dsi-Mir-963_5p

mirBase accession

MIMAT0012473

Sequence

0- ACAAGGUAAAUAUCAGGUUGUUUC -24

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Star sequence

Dsi-Mir-963_3p*

mirBase accession

MIMAT0012474

Sequence

38- AACAUCUGUAUAUACCUUUGAU -60

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