MirGeneDB 2.1

MirGeneDB ID

Cte-Mir-1986

Family name MIR-1986 (all species)
Seed GGAUUUC
Species Polychaete worm (Capitella teleta)
MiRBase ID
Paralogues
Orthologues Cgi-Mir-1986  Efe-Mir-1986  Lan-Mir-1986  Lgi-Mir-1986  Npo-Mir-1986  Obi-Mir-1986  Ovu-Mir-1986 
Node of Origin (locus) Lophotrochozoa
Node of Origin (family) Lophotrochozoa
Genome context
(Capitella_teleta_v1.0)
CAPTEscaffold_12: 607156-607216 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-1986)
Mir-1990-P1 CAPTEscaffold_12: 600050-600112 [+] Ensembl
Mir-2692 CAPTEscaffold_12: 600189-600249 [+] Ensembl
Mir-1990-P2 CAPTEscaffold_12: 606811-606875 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CGCAGCCCUGCAACAGAGGCACGGCACAGGCACGGGUCACGGGGAAUGCGCAUGCGCAAAUGACAUCUGUGGAUUUCCCAUGAUCCGUAACUGCGUCCUGCUCAAUGUCGUUUGCUGAACU
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Structure
        10          20        30        40        50          
CGCAGCCCUGCAACAGA--|   C   A   GC        C       G    UGCGCAA 
                   GGCA GGC CAG  ACGGGUCA GGGGAAU CGCA       \
                   UCGU CUG GUC  UGCCUAGU CCCUUUA GUGU       A
UCAAGUCGUUUGCUGUAAC^   C   C   AA        A       G    CUACAGU 
 .       110       100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsNo
Tissue expression
 +
To
Star sequence

Cte-Mir-1986_5p* (predicted)

mirBase accessionNone
Sequence
0- CACGGGUCACGGGGAAUGCGCA -22
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Mature sequence

Cte-Mir-1986_3p (predicted)

mirBase accessionNone
Sequence
39- UGGAUUUCCCAUGAUCCGUAAC -61
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