MirGeneDB

MirGeneDB ID

Cpi-Mir-214-v2

Family name MIR-214 (all species)
Seed ACAGCAG
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-214
Paralogues Cpi-Mir-214-v1 
Orthologues Aca-Mir-214-v2  Ami-Mir-214-v2  Bta-Mir-214-v2  Cfa-Mir-214-v2  Cli-Mir-214-v2  Cpo-Mir-214-v2  Dno-Mir-214-v2  Dre-Mir-214-v2  Ete-Mir-214-v2  Gga-Mir-214-v2  Hsa-Mir-214-v2  Mdo-Mir-214-v2  Mml-Mir-214-v2  Mmu-Mir-214-v2  Oan-Mir-214-v2  Ocu-Mir-214-v2  Rno-Mir-214-v2  Sha-Mir-214-v2  Sto-Mir-214-v2  Tgu-Mir-214-v2  Xtr-Mir-214-v2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(chrPic1)
JH585174: 220443-220505 [-] UCSC
Clustered MiRNAs
(< 10kb from Mir-214-v2)
Mir-214-v1 JH585174: 220443-220505 [-] UCSC
Mir-214-v2 JH585174: 220443-220505 [-] UCSC
Mir-199-P3-v1 JH585174: 227135-227195 [-] UCSC
Mir-199-P3-v2 JH585174: 227135-227195 [-] UCSC
Mir-199-P3-v3 JH585174: 227135-227195 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GGGACUGGCUGGACGGAGUUGUCAUGUGUCUGCCUGUCUACACUUGCUGUGCAGAACAUCCUCUCACCUGUACAGCAGGCACAGACAGGCAGUCACAUGACAACCCAGCCUGAAUGACAACCA
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Structure
        10          20        30        40        50        60 
GGGACUGGCUGGACGGA--|          U          ACA           GAACAUC 
                   GUUGUCAUGUG CUGCCUGUCU   CUUGCUGUGCA       \
                   CAACAGUACAC GACGGACAGA   GGACGACAUGU       C
ACCAACAGUAAGUCCGACC^          U          CAC           CCACUCU 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Te Te Te To
Star sequence

Cpi-Mir-214-v2_5p*

MirBase accessionMIMAT0037839
Sequence
0- UGCCUGUCUACACUUGCUGUGCA -23
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Mature sequence

Cpi-Mir-214-v2_3p

MirBase accessionMIMAT0037840
Sequence
40- UACAGCAGGCACAGACAGGCAGU -63
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