Mir-154-P3-v1

MirGeneDB ID

Bta-Mir-154-P3

Family name

MIR-154 (all species)

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-299

Paralogues

Bta-Mir-154-P1 Bta-Mir-154-P2-v1 Bta-Mir-154-P4 Bta-Mir-154-P5 Bta-Mir-154-P6a-v1 Bta-Mir-154-P6b Bta-Mir-154-P6c Bta-Mir-154-P7 Bta-Mir-154-P8a Bta-Mir-154-P8b Bta-Mir-154-P9 Bta-Mir-154-P10 Bta-Mir-154-P11 Bta-Mir-154-P12 Bta-Mir-154-P14 Bta-Mir-154-P16 Bta-Mir-154-P17 Bta-Mir-154-P18 Bta-Mir-154-P19 Bta-Mir-154-P21 Bta-Mir-154-P22 Bta-Mir-154-P23 Bta-Mir-154-P24 Bta-Mir-154-P25 Bta-Mir-154-P26 Bta-Mir-154-P27 Bta-Mir-154-P28 Bta-Mir-154-P29 Bta-Mir-154-P30 Bta-Mir-154-P31 Bta-Mir-154-P32 Bta-Mir-154-P33 Bta-Mir-154-P34 Bta-Mir-154-P35 Bta-Mir-154-P36

Orthologues

Cfa-Mir-154-P3-v1 Cja-Mir-154-P3 Cpo-Mir-154-P3-v1 Dno-Mir-154-P3-v1 Eca-Mir-154-P3-v1 Ete-Mir-154-P3-v1 Hsa-Mir-154-P3-v1 Laf-Mir-154-P3 Mml-Mir-154-P3-v1 Mmr-Mir-154-P3-v1 Mmu-Mir-154-P3-v1 Ocu-Mir-154-P3-v1 Pab-Mir-154-P3-v1 Rno-Mir-154-P3-v1

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037348.1: 65914212-65914266 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-154-P3-v1)

Mir-154-P1 NC_037348.1: 65912523-65912581 [+] UCSC Ensembl
Mir-154-P2-v2 NC_037348.1: 65913749-65913806 [+] UCSC Ensembl
Mir-154-P2-v1 NC_037348.1: 65913750-65913805 [+] UCSC Ensembl
Mir-154-P3-v1 NC_037348.1: 65914212-65914266 [+] UCSC Ensembl
Mir-154-P3-v2 NC_037348.1: 65914213-65914265 [+] UCSC Ensembl
Mir-154-P4 NC_037348.1: 65915443-65915499 [+] UCSC Ensembl
Mir-154-P36 NC_037348.1: 65915604-65915659 [+] UCSC Ensembl
Mir-154-P5 NC_037348.1: 65915956-65916011 [+] UCSC Ensembl
Mir-154-P6a-v1 NC_037348.1: 65916120-65916175 [+] UCSC Ensembl
Mir-154-P6a-v2 NC_037348.1: 65916120-65916175 [+] UCSC Ensembl
Mir-154-P7 NC_037348.1: 65916418-65916475 [+] UCSC Ensembl
Mir-154-P8a NC_037348.1: 65917157-65917214 [+] UCSC Ensembl
Mir-154-P8b NC_037348.1: 65917467-65917526 [+] UCSC Ensembl
Mir-154-P9 NC_037348.1: 65920329-65920384 [+] UCSC Ensembl
Mir-154-P10 NC_037348.1: 65920673-65920729 [+] UCSC Ensembl
Mir-154-P11 NC_037348.1: 65922476-65922533 [+] UCSC Ensembl
Mir-154-P12 NC_037348.1: 65923887-65923943 [+] UCSC Ensembl
Mir-154-P35 NC_037348.1: 65925899-65925954 [+] UCSC Ensembl
Mir-376-P1 NC_037348.1: 65928589-65928648 [+] UCSC Ensembl
Mir-376-P2 NC_037348.1: 65928963-65929020 [+] UCSC Ensembl
Mir-376-P3 NC_037348.1: 65929334-65929391 [+] UCSC Ensembl
Mir-154-P14 NC_037348.1: 65929490-65929545 [+] UCSC Ensembl
Mir-376-P4 NC_037348.1: 65929716-65929773 [+] UCSC Ensembl
Mir-376-P5 NC_037348.1: 65930080-65930137 [+] UCSC Ensembl
Mir-154-P16 NC_037348.1: 65932020-65932079 [+] UCSC Ensembl
Mir-154-P17 NC_037348.1: 65933715-65933777 [+] UCSC Ensembl
Mir-154-P18 NC_037348.1: 65934207-65934264 [+] UCSC Ensembl
Mir-154-P19 NC_037348.1: 65935015-65935078 [+] UCSC Ensembl
Mir-544 NC_037348.1: 65937023-65937079 [+] UCSC Ensembl
Mir-154-P21 NC_037348.1: 65937984-65938043 [+] UCSC Ensembl
Mir-154-P22 NC_037348.1: 65940135-65940188 [+] UCSC Ensembl
Mir-154-P23 NC_037348.1: 65940523-65940580 [+] UCSC Ensembl
Mir-154-P24 NC_037348.1: 65943535-65943592 [+] UCSC Ensembl
Mir-134 NC_037348.1: 65943909-65943973 [+] UCSC Ensembl
Mir-154-P25 NC_037348.1: 65944610-65944668 [+] UCSC Ensembl
Mir-154-P6b NC_037348.1: 65945376-65945432 [+] UCSC Ensembl
Mir-154-P26 NC_037348.1: 65948700-65948757 [+] UCSC Ensembl
Mir-154-P27 NC_037348.1: 65949014-65949074 [+] UCSC Ensembl
Mir-154-P28 NC_037348.1: 65949538-65949591 [+] UCSC Ensembl
Mir-154-P29 NC_037348.1: 65951143-65951202 [+] UCSC Ensembl
Mir-541 NC_037348.1: 65953000-65953065 [+] UCSC Ensembl
Mir-3957 NC_037348.1: 65953387-65953445 [+] UCSC Ensembl
Mir-154-P30 NC_037348.1: 65953907-65953960 [+] UCSC Ensembl
Mir-154-P31 NC_037348.1: 65954052-65954107 [+] UCSC Ensembl
Mir-154-P32 NC_037348.1: 65954195-65954250 [+] UCSC Ensembl
Mir-154-P33 NC_037348.1: 65954526-65954581 [+] UCSC Ensembl
Mir-154-P6c NC_037348.1: 65955040-65955095 [+] UCSC Ensembl
Mir-154-P34 NC_037348.1: 65955342-65955398 [+] UCSC Ensembl

Variant

Bta-Mir-154-P3-v1

Seed

AUGUGGG

Precursor
(pre-Mir +30nt flank)

CGUCACUGCCAUCGUGCGGUACUUGAAGAAAUGGUUUACCGUCCCACAUACAUUCUGAAUAUGUAUGUGGGACGGUAAACCGCUUCUUGGUAUCCAGCCCAGCCAUCAAAAGCCU

Get precursor sequence

Structure

        10            20        30        40        50       
CGUCACUGCCAUCGUGC----|     UG     A                     UUCU 
                     GGUACU  AAGAA UGGUUUACCGUCCCACAUACA    \
                     CUAUGG  UUCUU GCCAAAUGGCAGGGUGUAUGU    G
UCCGAAAACUACCGACCCGAC^     --     C                     AUAA 
   110       100        90          80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Star sequence

Bta-Mir-154-P3-v1_5p*

mirBase accession

MIMAT0009274

Sequence

0- AUGGUUUACCGUCCCACAUACA -22

Get sequence

Proposed targets

TargetScanVert: bta-miR-299

Mature sequence

Bta-Mir-154-P3-v1_3p

mirBase accession

None

Sequence

33- UAUGUGGGACGGUAAACCGCUU -55

Get sequence

Variant

Bta-Mir-154-P3-v2

Seed

GGUUUAC

Precursor
(pre-Mir +30nt flank)

GUCACUGCCAUCGUGCGGUACUUGAAGAAAUGGUUUACCGUCCCACAUACAUUCUGAAUAUGUAUGUGGGACGGUAAACCGCUUCUUGGUAUCCAGCCCAGCCAUCAAAAGCC

Get precursor sequence

Structure

        10            20        30        40        50      
GUCACUGCCAUCGUGCG----|    UG     A                      UCU 
                     GUACU  AAGAA UGGUUUACCGUCCCACAUACAU   \
                     UAUGG  UUCUU GCCAAAUGGCAGGGUGUAUGUA   G
CCGAAAACUACCGACCCGACC^    --     C                      UAA 
 110       100        90          80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-154-P3-v2_5p

mirBase accession

MIMAT0009274

Sequence

0- UGGUUUACCGUCCCACAUACAU -22

Get sequence

Proposed targets

TargetScanVert: bta-miR-299

Star sequence

Bta-Mir-154-P3-v2_3p*

mirBase accession

None

Sequence

31- GUAUGUGGGACGGUAAACCGCU -53

Get sequence