MirGeneDB 3.0

MirGeneDB ID

Bge-Mir-971

Family name MIR-971 (all species)
Species Cockroach (Blattella germanica)
MiRBase ID
Paralogues Bge-Mir-971-v1 
Orthologues Aae-Mir-971  Aga-Mir-971  Dan-Mir-971  Dlo-Mir-971  Dme-Mir-971  Dmo-Mir-971  Dsi-Mir-971  Dya-Mir-971  Gpa-Mir-971  Hme-Mir-971  Tca-Mir-971 
Node of Origin (locus) Neoptera
Node of Origin (family) Neoptera
Genome context
(Bger_2.0)
KZ615707.1: 119207-119269 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-971-v2)
Mir-971-v2 KZ615707.1: 119207-119269 [+] Ensembl
Mir-971-v1 KZ615707.1: 119208-119269 [+] Ensembl
Variant

Bge-Mir-971-v2

Seed CACUCUA
Precursor
(pre-Mir +30nt flank)
AAGACUGCUGUGGAUAUCUCUGAGGUCCGUCCACUCUAAGCUCGAACACCAAGCCUGGAACCUGUACCGUUUGGUGUUCUACCUUACAGUGAGCGGACUUCAGUAGCAAGCAUCACGAUCAAG
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Structure
        10         20        30        40        50        60 
AAGACUGCUGUGGAUAUCU-|         UC    C    CUC           CUGGAA 
                    CUGAGGUCCG  CACU UAAG   GAACACCAAGC      C
                    GACUUCAGGC  GUGA AUUC   CUUGUGGUUUG      C
GAACUAGCACUACGAACGAU^         GA    C    CAU           CCAUGU 
 120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ad Co Co Di Di Eg Eg Em Em Em Em Em Em Em Em Em Em Ny Ny Ny Ny Ny Ny Ny Ny Ov
Mature sequence

Bge-Mir-971-v2_5p

mirBase accessionNone
Sequence
0- CCACUCUAAGCUCGAACACCAAGC -24
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Star sequence

Bge-Mir-971-v2_3p*

mirBase accessionNone
Sequence
40- UUGGUGUUCUACCUUACAGUGAG -63
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Variant

Bge-Mir-971-v1

Seed ACUCUAA
Precursor
(pre-Mir +30nt flank)
AGACUGCUGUGGAUAUCUCUGAGGUCCGUCCACUCUAAGCUCGAACACCAAGCCUGGAACCUGUACCGUUUGGUGUUCUACCUUACAGUGAGCGGACUUCAGUAGCAAGCAUCACGAUCAAG
Get precursor sequence
Structure
        10          20        30        40        50        60
AGACUGCUGUGGAUAUCU--|         UC    C    CUC           CUGGAA 
                    CUGAGGUCCG  CACU UAAG   GAACACCAAGC      C
                    GACUUCAGGC  GUGA AUUC   CUUGUGGUUUG      C
GAACUAGCACUACGAACGAU^         GA    C    CAU           CCAUGU 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ad Co Co Di Di Eg Eg Em Em Em Em Em Em Em Em Em Em Ny Ny Ny Ny Ny Ny Ny Ny Ov
Mature sequence

Bge-Mir-971-v1_5p

mirBase accessionNone
Sequence
0- CACUCUAAGCUCGAACACCAAGC -23
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Star sequence

Bge-Mir-971-v1_3p*

mirBase accessionNone
Sequence
39- UUGGUGUUCUACCUUACAGUGAG -62
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