MirGeneDB 2.1

MirGeneDB ID

Bge-Mir-3-P28a-v2

Family name MIR-3 (all species)
Seed UCACUGG
Species Cockroach (Blattella germanica)
MiRBase ID
Paralogues Bge-Mir-3-P28a-v1  Bge-Mir-3-P28b-v1  Bge-Mir-3-P28b-v2  Bge-Mir-3-P29-v1  Bge-Mir-3-P29-v2 
Orthologues Dma-Mir-3  Dpu-Mir-3 
Node of Origin (locus) B. germanica
Node of Origin (family) Pancrustacea
Genome context
(Bger_2.0)
KZ618317.1: 56244-56302 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AAGAGAGGGUCAUACGCACUAGUGGUGGGUGAUAGUGACUCCCCAAGUGAUGCUACAUUCUGAACGUAUCACUGGGAAGACAUUAUCGUUAGCUACAAGUGAAAAGCAACAAACUAAAA
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Structure
        10          20        30        40        50         
AAGAGAGGGUCAUACGC--|  A     GG         A  C    A       UACAU 
                   ACU GUGGU  GUGAUAGUG CU CCCA GUGAUGC     U
                   UGA CAUCG  UGCUAUUAC GA GGGU CACUAUG     C
AAAAUCAAACAACGAAAAG^  A     AU         A  A    -       CAAGU 
       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ad Ny Ny Ny Ny Ny Ny Ny Ny Ov Co Co Em Em Em Em Em Em Em Em Em Em No No
Star sequence

Bge-Mir-3-P28a-v2_5p*

mirBase accessionNone
Sequence
0- GAUAGUGACUCCCCAAGUGAUGC -23
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Mature sequence

Bge-Mir-3-P28a-v2_3p

mirBase accessionNone
Sequence
37- AUCACUGGGAAGACAUUAUCGU -59
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