MirGeneDB ID | Bge-Mir-279-o38 |
Family name |
MIR-279 (all species) |
Seed |
GACUAGA |
Species |
Cockroach (Blattella germanica) |
MiRBase ID |
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Paralogues |
Bge-Mir-279-o35
Bge-Mir-279-o36
Bge-Mir-279-o37
Bge-Mir-279-o39
|
Orthologues |
Bpl-Mir-279
Cgi-Mir-279
Esc-Mir-279
Isc-Mir-279
Lgi-Mir-279
Npo-Mir-279
Obi-Mir-279
Ovu-Mir-279
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Node of Origin (locus) |
B. germanica
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Node of Origin (family) |
Protostomia
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Genome context (Bger_2.0) |
KZ614992.1: 537892-537951 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
CAACACAAGUGUCAAGUCCUUACAGCCUGUGAUGAGUGUAGGUCUGGUGCACAUGUGUUAAAAAGCUGUGACUAGAUCCACACUCAUCACUGGAGGUGAGAUACAUCUGCGGGGUGAACC
Get precursor sequence
|
Structure | 10 20 30 40 50
CAACACAAGUGUCAAGUC--| AG U A G UGUGUU
CUUAC CC GUGAUGAGUGU GGUCUGGU CACA \
GAGUG GG CACUACUCACA CUAGAUCA GUGU A
CCAAGUGGGGCGUCUACAUA^ GA U C - CGAAAA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
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Ad |
Ad |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ov |
Co |
Co |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
No |
No |
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Star sequence |
Bge-Mir-279-o38_5p* |
mirBase accession | None |
Sequence |
0- GAUGAGUGUAGGUCUGGUGCACA -23
Get sequence
|
Mature sequence |
Bge-Mir-279-o38_3p |
mirBase accession | None |
Sequence |
38- UGACUAGAUCCACACUCAUCAC -60
Get sequence
|