MirGeneDB 3.0
MirGeneDB ID

Ava-Mir-12598-P1a

Family name MIR-12598 (all species)
Species Bdelloid rotifer (Adineta vaga)
MiRBase ID
Paralogues Ava-Mir-12598-P1b  Ava-Mir-12598-P2a  Ava-Mir-12598-P2b  Ava-Mir-12598-P3  Ava-Mir-12598-P4a  Ava-Mir-12598-P4b  Ava-Mir-12598-P5a  Ava-Mir-12598-P5b  Ava-Mir-12598-P6a  Ava-Mir-12598-P6b  Ava-Mir-12598-P7a  Ava-Mir-12598-P7b 
Orthologues Bpl-Mir-12598-P1a 
Node of Origin (locus) A. vaga
Node of Origin (family) Rotifera
Genome context
(GCA_021613535.1_ASM2161353v1_AVA)		 CP075497.1: 2491467-2491526 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-12598-P1a)		 Novel-2-P1 CP075497.1: 2491111-2491168 [+] Ensembl
Mir-12598-P5a CP075497.1: 2491217-2491279 [+] Ensembl
Mir-12598-P7b CP075497.1: 2491342-2491403 [+] Ensembl
Mir-12598-P1a CP075497.1: 2491467-2491526 [+] Ensembl
Novel-6-P1 CP075497.1: 2491586-2491648 [+] Ensembl
Seed ACUGUUC
Precursor
(pre-Mir +30nt flank)		 
AAAUGAAUUUUUAUUUUGUGUAAGUUAGGCAACUGUUCAGUUAUACCUCGCUCGGAUAUUAGUAGGAGCGAAGUACCACUGAACGGUAGUCGAAUGAACAAUCAAUCUUCGAUAUUUACC
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Structure
        10          20        30        40        50         
AAAUGAAUUUUUAUUUUG--|  AA   A   A          UA   C     CGGAUA 
                    UGU  GUU GGC ACUGUUCAGU  UAC UCGCU      U
                    ACA  UAA CUG UGGCAAGUCA  AUG AGCGA      U
CCAUUUAUAGCUUCUAACUA^  AG   G   A          CC   A     GGAUGA 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
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Mature sequence

Ava-Mir-12598-P1a_5p
mirBase accessionNone
Sequence 
0- AACUGUUCAGUUAUACCUCGCU -22
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Star sequence

Ava-Mir-12598-P1a_3p*
mirBase accessionNone
Sequence 
38- CGAAGUACCACUGAACGGUAGU -60
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