Mir-12598-P1a

MirGeneDB ID

Bpl-Mir-12598-P1a

Family name

MIR-12598 (all species)

Species

Monogonont Rotifer 1 (Brachionus plicatilis)

MiRBase ID

Paralogues

Bpl-Mir-12598-P1b Bpl-Mir-12598-P2a Bpl-Mir-12598-P2b Bpl-Mir-12598-P3a Bpl-Mir-12598-P3b

Orthologues

Ava-Mir-12598-P1a

Node of Origin (locus)

B. plicatilis

Node of Origin (family)

Rotifera

Genome context
(Bpl_ASM1027981)

QEOQ01000670.1: 1235786-1235850 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-12598-P1a)

Mir-12598-P2a QEOQ01000670.1: 1229925-1229988 [-] Ensembl
Mir-12598-P3a QEOQ01000670.1: 1230041-1230103 [-] Ensembl
Mir-12599-P1b QEOQ01000670.1: 1230305-1230363 [-] Ensembl
Mir-12598-P1b QEOQ01000670.1: 1230425-1230489 [-] Ensembl
Mir-12598-P2b QEOQ01000670.1: 1235286-1235349 [-] Ensembl
Mir-12598-P3b QEOQ01000670.1: 1235402-1235464 [-] Ensembl
Mir-12599-P1a QEOQ01000670.1: 1235666-1235724 [-] Ensembl
Mir-12598-P1a QEOQ01000670.1: 1235786-1235850 [-] Ensembl

Seed

ACUGUUU

Precursor
(pre-Mir +30nt flank)

AUCAUCAACAUUAGCAGUGUCACGAGAUAGAACUGUUUAUAAAUAGCCUCGCUUGUUAGAGAAGCAUUUAUGUGAGGGUAUUUCUAAGCAGUAAUUGUUCGGACAUCUAUUCAUCAACCCAAGUC

Get precursor sequence

Structure

        10           20        30        40        50        60  
AUCAUCAACAUUAGCAG---|   A    AUAGA        U     G      UUGUUAGAG 
                    UGUC CGAG     ACUGUUUA AAAUA CCUCGC         \
                    ACAG GCUU     UGACGAAU UUUAU GGAGUG         A
CUGAACCCAACUACUUAUCU^   -    GUUAA        C     G      UAUUUACGA 
   120       110        100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Bpl-Mir-12598-P1a_5p

mirBase accession

None

Sequence

0- AACUGUUUAUAAAUAGCCUCGC -22

Get sequence

Star sequence

Bpl-Mir-12598-P1a_3p*

mirBase accession

None

Sequence

43- GAGGGUAUUUCUAAGCAGUAAU -65

Get sequence