MirGeneDB 3.0
MirGeneDB ID

Bpl-Mir-12598-P3a

Family name MIR-12598 (all species)
Species Monogonont Rotifer 1 (Brachionus plicatilis)
MiRBase ID
Paralogues Bpl-Mir-12598-P1a  Bpl-Mir-12598-P1b  Bpl-Mir-12598-P2a  Bpl-Mir-12598-P2b  Bpl-Mir-12598-P3b 
Orthologues Ava-Mir-12598-P3 
Node of Origin (locus) B. plicatilis
Node of Origin (family) Rotifera
Genome context
(Bpl_ASM1027981)		 QEOQ01000670.1: 1230041-1230103 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-12598-P3a)		 Mir-12598-P2a QEOQ01000670.1: 1229925-1229988 [-] Ensembl
Mir-12598-P3a QEOQ01000670.1: 1230041-1230103 [-] Ensembl
Mir-12599-P1b QEOQ01000670.1: 1230305-1230363 [-] Ensembl
Mir-12598-P1b QEOQ01000670.1: 1230425-1230489 [-] Ensembl
Mir-12598-P2b QEOQ01000670.1: 1235286-1235349 [-] Ensembl
Mir-12598-P3b QEOQ01000670.1: 1235402-1235464 [-] Ensembl
Mir-12599-P1a QEOQ01000670.1: 1235666-1235724 [-] Ensembl
Mir-12598-P1a QEOQ01000670.1: 1235786-1235850 [-] Ensembl
Seed ACUGUUU
Precursor
(pre-Mir +30nt flank)		 
GUGGAAUUGUGGAAAAAGGAAUCUGACUUUUACUGUUUUUUGAUAGCCUCGCGUUUCAGUCUCUCAGAUCGCGAGACUAUGUCAAACAGUUAAAGUUGGAAAAUCUGUGAACAACUAGUGUCA
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Structure
        10        20          30        40        50        60 
GUGGAAUUGUGGAAAAAGGAA--| UG     U       UUUG    C      UUUCAGU 
                       UC  ACUUU ACUGUUU    AUAG CUCGCG       C
                       AG  UGAAA UGACAAA    UAUC GAGCGC       U
ACUGUGAUCAACAAGUGUCUAAA^ GU     U       CUG-    A      UAGACUC 
 120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
To
Mature sequence

Bpl-Mir-12598-P3a_5p
mirBase accessionNone
Sequence 
0- UACUGUUUUUUGAUAGCCUCGCG -23
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Star sequence

Bpl-Mir-12598-P3a_3p*
mirBase accessionNone
Sequence 
41- CGAGACUAUGUCAAACAGUUAA -63
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