MirGeneDB 3.0
MirGeneDB ID

Bpl-Mir-12598-P2a

Family name MIR-12598 (all species)
Species Monogonont Rotifer 1 (Brachionus plicatilis)
MiRBase ID
Paralogues Bpl-Mir-12598-P1a  Bpl-Mir-12598-P1b  Bpl-Mir-12598-P2b  Bpl-Mir-12598-P3a  Bpl-Mir-12598-P3b 
Orthologues Ava-Mir-12598-P2a 
Node of Origin (locus) B. plicatilis
Node of Origin (family) Rotifera
Genome context
(Bpl_ASM1027981)		 QEOQ01000670.1: 1229925-1229988 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-12598-P2a)		 Mir-12598-P2a QEOQ01000670.1: 1229925-1229988 [-] Ensembl
Mir-12598-P3a QEOQ01000670.1: 1230041-1230103 [-] Ensembl
Mir-12599-P1b QEOQ01000670.1: 1230305-1230363 [-] Ensembl
Mir-12598-P1b QEOQ01000670.1: 1230425-1230489 [-] Ensembl
Mir-12598-P2b QEOQ01000670.1: 1235286-1235349 [-] Ensembl
Mir-12598-P3b QEOQ01000670.1: 1235402-1235464 [-] Ensembl
Mir-12599-P1a QEOQ01000670.1: 1235666-1235724 [-] Ensembl
Mir-12598-P1a QEOQ01000670.1: 1235786-1235850 [-] Ensembl
Seed CACUGUU
Precursor
(pre-Mir +30nt flank)		 
UAGUGUCAUCGCUAAAUAAGUAUCAGUGUUUCACUGUUUGUCAAUAGCCUCGCUAGAUGUGUUCCUAGUGCCUGGCUAUUGCAAAUAGUCGAUAUUCUGAACCUGUUUUCAUCAAAUACAAAAA
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Structure
        10          20        30         40        50        60 
UAGUGUCAUCGCUAAAUA--  UA    U  U  -|       U        UC  UAGAUGU 
                    AG  UCAG GU UC ACUGUUUG CAAUAGCC  GC       G
                    UC  AGUC UA AG UGAUAAAC GUUAUCGG  CG       U
AAAAACAUAAACUACUUUUG  CA    U  U  C^       -        UC  UGAUCCU 
  120       110       100        90         80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Bpl-Mir-12598-P2a_5p
mirBase accessionNone
Sequence 
0- UCACUGUUUGUCAAUAGCCUCGC -23
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Star sequence

Bpl-Mir-12598-P2a_3p* (predicted)
mirBase accessionNone
Sequence 
39- GCCUGGCUAUUGCAAAUAGUCGAUA -64
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