MirGeneDB 2.1

MirGeneDB ID

Xtr-Mir-214-v2

Family name MIR-214 (all species)
Seed ACAGCAG
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-214
Paralogues Xtr-Mir-214-v1 
Orthologues Aca-Mir-214-v2  Ami-Mir-214-v2  Bta-Mir-214-v2  Cfa-Mir-214-v2  Cli-Mir-214-v2  Cmi-Mir-214-v2  Cpi-Mir-214-v2  Cpo-Mir-214-v2  Dno-Mir-214-v2  Ete-Mir-214-v2  Gga-Mir-214-v2  Gja-Mir-214-v2  Hsa-Mir-214-v2  Lch-Mir-214  Loc-Mir-214-v2  Mdo-Mir-214-v2  Mml-Mir-214-v2  Mmu-Mir-214-v2  Mun-Mir-214  Oan-Mir-214-v2  Ocu-Mir-214-v2  Pbv-Mir-214-v2  Rno-Mir-214-v2  Sha-Mir-214-v2  Spt-Mir-214  Sto-Mir-214-v2  Tgu-Mir-214-v2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(xenTro9_add)
chr4: 97346627-97346689 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-214-v2)
Mir-199-P1-v1 chr4: 97341514-97341574 [+] UCSC Ensembl
Mir-199-P1-v2 chr4: 97341514-97341574 [+] UCSC Ensembl
Mir-199-P1-v3 chr4: 97341514-97341574 [+] UCSC Ensembl
Mir-214-v1 chr4: 97346627-97346689 [+] UCSC Ensembl
Mir-214-v2 chr4: 97346627-97346689 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGAUUGGCUGGAAGGAGUUGUCAUGUGUCUGCCUGUCUACACUUGCUGUGCAGAACAUCCUCUCACCUGUACAGCAGGCACAGACAGGCAGUCACAUGACAACCCAGCCUGAAUGACAACCA
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Structure
        10          20        30        40        50        60 
GGGAUUGGCUGGAAGGA--|          U          ACA           GAACAUC 
                   GUUGUCAUGUG CUGCCUGUCU   CUUGCUGUGCA       \
                   CAACAGUACAC GACGGACAGA   GGACGACAUGU       C
ACCAACAGUAAGUCCGACC^          U          CAC           CCACUCU 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Em Em Em Em He
Star sequence

Xtr-Mir-214-v2_5p*

mirBase accessionNone
Sequence
0- UGCCUGUCUACACUUGCUGUGCA -23
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Mature sequence

Xtr-Mir-214-v2_3p

mirBase accessionMIMAT0003627
Sequence
40- UACAGCAGGCACAGACAGGCAGU -63
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Proposed targets TargetScanVert: xtr-miR-214