| MirGeneDB ID | Spt-Mir-490 |
|---|---|
| Family name | MIR-490 (all species) |
| Seed | AACCUGG |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-490 Ami-Mir-490 Bta-Mir-490 Cfa-Mir-490 Cli-Mir-490 Cpi-Mir-490 Cpo-Mir-490 Dno-Mir-490 Ete-Mir-490 Gga-Mir-490 Gja-Mir-490 Hsa-Mir-490 Mdo-Mir-490 Mml-Mir-490 Mmu-Mir-490 Oan-Mir-490 Ocu-Mir-490 Pbv-Mir-490 Rno-Mir-490 Sha-Mir-490 Tgu-Mir-490 |
| Node of Origin (locus) | Amniota |
| Node of Origin (family) | Amniota |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01008412.1: 243811-243872 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AGUGCUGGCUUAUAAGUUCAUGGUUCGACACCAUGGAUCUCCAGGUGGGUCAAGAGUAUAGAGAAACACCAACCUGGAGGACUCCAUGCUGUUGAGCUGUUCACAAGCAGCGGAACCCCAUGGet precursor sequence |
| Structure | 10 20 30 40 50 AGUGCUGGCUUAUAAGUUC--- C --| G CAAGAGUA AUGGUUCGACA CAUGGA UCUCCAGGU GGU \ UGUCGAGUUGU GUACCU GGAGGUCCA CCA U GUACCCCAAGGCGACGAACACU C CA^ A CAAAGAGA 120 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Spt-Mir-490_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- CCAUGGAUCUCCAGGUGGGU -20
Get sequence
|
| Mature sequence | Spt-Mir-490_3p (predicted) |
| mirBase accession | None |
| Sequence |
39- CAACCUGGAGGACUCCAUGCUGU -62
Get sequence
|
