MirGeneDB ID | Bta-Mir-490 |
Family name |
MIR-490 (all species) |
Species |
Cow (Bos taurus) |
MiRBase ID |
bta-mir-490
|
Paralogues |
|
Orthologues |
Aca-Mir-490
Ami-Mir-490
Cfa-Mir-490
Cja-Mir-490
Cli-Mir-490
Cpi-Mir-490
Cpo-Mir-490
Dno-Mir-490
Eca-Mir-490
Ete-Mir-490
Gga-Mir-490
Gja-Mir-490
Hsa-Mir-490
Laf-Mir-490
Mdo-Mir-490
Mml-Mir-490
Mmr-Mir-490
Mmu-Mir-490
Neu-Mir-490
Oan-Mir-490
Ocu-Mir-490
Pab-Mir-490
Pbv-Mir-490
Rno-Mir-490
Sha-Mir-490
Spt-Mir-490
Tgu-Mir-490
|
Node of Origin (locus) |
Amniota
|
Node of Origin (family) |
Amniota
|
Genome context (GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037331.1: 100636709-100636768 [+]
UCSC
Ensembl
|
Seed |
AACCUGG |
Precursor (pre-Mir +30nt flank) |
UUGCUGGUUUGGAAAGUUCAUUGUUCGACACCAUGGAUCUCCAGGUGGGUCACGUUUAGAGAUACACCAACCUGGAGGACUCCAUGCUGUUGAGCUGUUCACAAGCAGCGGACACUUCUA
Get precursor sequence
|
Structure | 10 20 30 40 50
UUGCUGGUUUGGAAAGUUCAUU--- C --| G CACGUUU
GUUCGACA CAUGGA UCUCCAGGU GGU \
CGAGUUGU GUACCU GGAGGUCCA CCA A
AUCUUCACAGGCGACGAACACUUGU C CA^ A CAUAGAG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Ad |
Bo |
Br |
Ce |
Co |
Co |
De |
Fe |
He |
Hy |
Ir |
Ki |
La |
Lo |
Mi |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Star sequence |
Bta-Mir-490_5p* |
mirBase accession | None |
Sequence |
0- CCAUGGAUCUCCAGGUGGGU -20
Get sequence
|
Mature sequence |
Bta-Mir-490_3p |
mirBase accession | MIMAT0009331 |
Sequence |
37- CAACCUGGAGGACUCCAUGCUGU -60
Get sequence
|
Proposed targets |
TargetScanVert: bta-miR-490
|