| MirGeneDB ID | Sha-Mir-671 |
|---|
| Family name |
MIR-671 (all species) |
|---|
| Seed |
GGAAGCC |
|---|
| Species |
Tasmanian devil (Sarcophilus harrisii) |
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| MiRBase ID |
|
|---|
| Paralogues |
|
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| Orthologues |
Bta-Mir-671
Cfa-Mir-671
Cpo-Mir-671
Dno-Mir-671
Ete-Mir-671
Hsa-Mir-671
Mml-Mir-671
Mmu-Mir-671
Ocu-Mir-671
Rno-Mir-671
|
|---|
| Node of Origin (locus) |
Theria
|
|---|
| Node of Origin (family) |
Theria
|
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Genome context
(DEVIL_add) |
GL861667.1: 766514-766573 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UGGCCGGGGAACUGGCUGGACAGGAAGAGGAGGAAGCCCUGGAGGGGCUGGAGGUGCUUGACGUUUUCCUACGCUUCUCAGGGCUGCACCUUUUUCGGGCAGUUGAGCCGGGCCUGGUGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGGCCGGGGAACUGGCUGGACA--| AGGA G U-- UGCU
GGAAGAGG AGCCCUG AGGGGC GGAGG U
CUUUUUCC UCGGGAC UCUUCG CCUUU G
CGUGGUCCGGGCCGAGUUGACGGG^ ACG- - CAU UGCA
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | UG at 5p(-14) |
|---|
Tissue expression
|
| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
| |
|
|
|---|
| Mature sequence |
Sha-Mir-671_5p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- AGGAAGCCCUGGAGGGGCUGGAGG -24
Get sequence
|
|---|
| Co-mature sequence |
Sha-Mir-671_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
36- UCCUACGCUUCUCAGGGCUGCACC -60
Get sequence
|
|---|
