MirGeneDB ID | Bta-Mir-671 |
Family name |
MIR-671 (all species) |
Species |
Cow (Bos taurus) |
MiRBase ID |
bta-mir-671
|
Paralogues |
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Orthologues |
Cfa-Mir-671
Cja-Mir-671
Cpo-Mir-671
Dno-Mir-671
Eca-Mir-671
Ete-Mir-671
Hsa-Mir-671
Laf-Mir-671
Mml-Mir-671
Mmr-Mir-671
Mmu-Mir-671
Neu-Mir-671
Ocu-Mir-671
Pab-Mir-671
Rno-Mir-671
Sha-Mir-671
|
Node of Origin (locus) |
Theria
|
Node of Origin (family) |
Theria
|
Genome context (GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037331.1: 113815922-113815981 [+]
UCSC
Ensembl
|
Seed |
CCGGUUC |
Precursor (pre-Mir +30nt flank) |
UGGCCGCCGACCUGGCAGGCCAGGAAGAGGAGGAAGCCCUGGAGGGGCUGGAGGUGAUGGAUGUUUUCCUCCGGUUCUCAGGGCUCCACCUUUUCCGGGCCGUGGAGCCAGGGCUGGUGC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UGGCCGCCGACCUGGCA--| A A A GA UGAUGG
GGCC GGAAGAGG GGA GCCCUG GGGGCUGGAGG \
CCGG CCUUUUCC CCU CGGGAC UCUUGGCCUCC A
CGUGGUCGGGACCGAGGUG^ G A - -- UUUUGU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
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Ad |
Bo |
Br |
Ce |
Co |
Co |
De |
Fe |
He |
Hy |
Ir |
Ki |
La |
Lo |
Mi |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
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Star sequence |
Bta-Mir-671_5p* |
mirBase accession | MIMAT0009365 |
Sequence |
0- AGGAAGCCCUGGAGGGGCUGGAGG -24
Get sequence
|
Proposed targets |
TargetScanVert: bta-miR-671
|
Mature sequence |
Bta-Mir-671_3p |
mirBase accession | None |
Sequence |
39- UCCGGUUCUCAGGGCUCCACC -60
Get sequence
|