MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-877

Family name MIR-877 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-877
Paralogues
Orthologues Bta-Mir-877  Cfa-Mir-877  Cja-Mir-877  Ete-Mir-877  Hsa-Mir-877  Laf-Mir-877  Mml-Mir-877  Mmr-Mir-877  Mmu-Mir-877  Pab-Mir-877 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)		 chr20: 3318872-3318956 [+] UCSC Ensembl
Seed UAGAGGA
Precursor
(pre-Mir +30nt flank)		 
GAUGAUACUGCCGCUGAGAAACUAGAAAAGGUAGAGGAGAUGGCGCAGGGGACACAAGGUAGGCCUUGCGGGUCUGUGGGCCCUUGGACAUGUGUCCUCUUCUCCCUCCUCCCAGGUAUAUGAGGAACUGCGAGCUACUGGGGCA
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Structure
        10        20           30        40        50        60        70   
GAUGAUACUGCCGCUGAGAAACUAGAAAA---| UA      AU  CGC        CAAGGUAGGCCUUGCGGG 
                                GG  GAGGAG  GG   AGGGGACA                  U
                                CC  CUCCUC  CC   UCUCCUGU                  C
ACGGGGUCAUCGAGCGUCAAGGAGUAUAUGGA^ --      --  UCU        GUACAGGUUCCCGGGUGU 
   140       130       120         110         100        90        80
Deep sequencing
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CommentMir-877 is a conserved mirtron cut at both ends by the spliceosome.
3' NTU Yes
MotifsNo
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-877_5p
mirBase accessionMIMAT0005285
Sequence 
0- GUAGAGGAGAUGGCGCAGGGGACA -24
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Proposed targets microrna.org: MIMAT0005285
TargetScanVert: rno-miR-877
miRDB: MIMAT0005285
Star sequence

Rno-Mir-877_3p*
mirBase accessionNone
Sequence 
64- UCCUCUUCUCCCUCCUCCCAG -85
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