| MirGeneDB ID | Cfa-Mir-877 |
|---|
| Family name |
MIR-877 (all species) |
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| Species |
Dog (Canis familiaris) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Bta-Mir-877
Cja-Mir-877
Ete-Mir-877
Hsa-Mir-877
Laf-Mir-877
Mml-Mir-877
Mmr-Mir-877
Mmu-Mir-877
Pab-Mir-877
Rno-Mir-877
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| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
|
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Genome context
(canFam3_add) |
chr12: 406900-406984 [+]
UCSC
Ensembl
|
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| Seed |
UAGAGGA |
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Precursor
(pre-Mir +30nt flank) |
GAUGACACAGCUGCUGAGAGGCUAGAGAAGGUAGAGGAGAUGGCGCAGGGGACAUGGGCUGAGACUUGGGAGUUCCUAGAACCUCUAGACAUGUGUCCUCUUCUCCCUCCUCCAGGUAUAUGAAGAAUUGCGGGCGACCGGGGCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GAUGACACAGCUGCUGAGAGG---------| A A UA U AGGGGACAUGGGCUGAGACUUG
CU GAG AGG GAGGAGA GGCGC G
GA CUC UCC CUCUUCU CUGUG G
ACGGGGCCAGCGGGCGUUAAGAAGUAUAUG^ C C -- C UACAGAUCUCCAAGAUCCUUGA
140 130 120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | Mir-877 is a conserved mirtron cut at both ends by the spliceosome. |
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| 3' NTU |
Yes
|
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| Motifs | No |
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Tissue expression
|
| An |
An |
An |
Bl |
Ce |
Co |
He |
Hi |
Hi |
Hy |
Ki |
Ki |
Li |
Lu |
Ov |
Sk |
Te |
Te |
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| Mature sequence |
Cfa-Mir-877_5p |
| mirBase accession | None |
|---|
| Sequence |
0- GUAGAGGAGAUGGCGCAGGGGACA -24
Get sequence
|
|---|
| Star sequence |
Cfa-Mir-877_3p* |
| mirBase accession | None |
|---|
| Sequence |
65- UCCUCUUCUCCCUCCUCCAG -85
Get sequence
|
|---|
