MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-877

Family name MIR-877 (all species)
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-877  Cfa-Mir-877  Ete-Mir-877  Hsa-Mir-877  Laf-Mir-877  Mml-Mir-877  Mmr-Mir-877  Mmu-Mir-877  Pab-Mir-877  Rno-Mir-877 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021918.1: 32630946-32631031 [+] UCSC Ensembl
Seed UAGAGGA
Precursor
(pre-Mir +30nt flank)		 
GAUGACACAGCUGCCGAGAGGCUAGAGAAGGUAGAGGAGAUGGCGCAGGGGACACGGGCUAAAACUCGGGGGUUCCUGGGGCCCUCAGACAUGUGUCCUCUUCUCCCUCCUCCCAGGUGUAUGAGGAAUUGCGGGCCACUGGGGCA
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Structure
        10        20           30        40        50        60        70    
GAUGACACAGCUGCCGAGAGGCUAGAGAA---| UA      AU  CGC        CGGGCUAAAACUCGGGGGU 
                                GG  GAGGAG  GG   AGGGGACA                   \
                                CC  CUCCUC  CC   UCUCCUGU                   U
ACGGGGUCACCGGGCGUUAAGGAGUAUGUGGA^ --      --  UCU        GUACAGACUCCCGGGGUCC 
    140       130       120         110         100        90        80
Deep sequencing
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CommentMir-877 is a conserved mirtron cut at both ends by the spliceosome.
3' NTU No
MotifsNo
Tissue expression
- +
To
Mature sequence

Cja-Mir-877_5p
mirBase accessionNone
Sequence 
0- GUAGAGGAGAUGGCGCAGGGGACA -24
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Star sequence

Cja-Mir-877_3p*
mirBase accessionNone
Sequence 
65- UCCUCUUCUCCCUCCUCCCAG -86
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