| MirGeneDB ID | Bta-Mir-877 |
|---|
| Family name |
MIR-877 (all species) |
|---|
| Species |
Cow (Bos taurus) |
|---|
| MiRBase ID |
bta-mir-877
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Cfa-Mir-877
Cja-Mir-877
Ete-Mir-877
Hsa-Mir-877
Laf-Mir-877
Mml-Mir-877
Mmr-Mir-877
Mmu-Mir-877
Pab-Mir-877
Rno-Mir-877
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
|---|
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037350.1: 28399546-28399630 [-]
UCSC
Ensembl
|
|---|
| Seed |
UAGAGGA |
|---|
Precursor
(pre-Mir +30nt flank) |
GACGACACGGCUGCUGAGAGGCUCGAGAAGGUAGAGGAGAUGGCGCAGGGGACACGGGCUAAGACUGGGGGCUCCCGGGACCCCCCAACAUGUGUCCUCUUCUCCCUCCUCCCAGGUGUACGAGGAAUUGCGGGCCACCGGGGCG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60 70
GACGACACGGCUGCUGAGAGG AGAA---| UA AU CGC CGGGCUAAGACUGGGGGC
CUCG GG GAGGAG GG AGGGGACA U
GAGC CC CUCCUC CC UCUCCUGU C
GCGGGGCCACCGGGCGUUAAG AUGUGGA^ -- -- UCU GUACAACCCCCCAGGGCC
140 130 120 110 100 90 80 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | Mir-877 is a conserved mirtron cut at both ends by the spliceosome. |
|---|
| 3' NTU |
Yes
|
|---|
| Motifs | No |
|---|
Tissue expression
|
| Ad |
Bo |
Br |
Ce |
Co |
Co |
De |
Fe |
He |
Hy |
Ir |
Ki |
La |
Lo |
Mi |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Bta-Mir-877_5p |
| mirBase accession | MIMAT0009381 |
|---|
| Sequence |
0- GUAGAGGAGAUGGCGCAGGGGACA -24
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: bta-miR-877
|
|---|
| Star sequence |
Bta-Mir-877_3p* |
| mirBase accession | None |
|---|
| Sequence |
64- UCCUCUUCUCCCUCCUCCCAG -85
Get sequence
|
|---|
