MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-452

Family name MIR-452 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-452
Paralogues
Orthologues Bta-Mir-452-v1  Cfa-Mir-452-v1  Cja-Mir-452-v1  Cpo-Mir-452-v1  Ete-Mir-452-v1  Hsa-Mir-452-v1  Laf-Mir-452  Mml-Mir-452-v1  Mmr-Mir-452-v1  Mmu-Mir-452-v1  Ocu-Mir-452-v1  Pab-Mir-452-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)		 928997776: 329-389 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-452-v1)		 Mir-452-v1 928997776: 329-389 [-] UCSC Ensembl
Mir-452-v2 928997776: 330-386 [-] UCSC Ensembl
Variant

Rno-Mir-452-v1
Seed ACUGUUU
Precursor
(pre-Mir +30nt flank)		 
GCUUCUCUCUCAUAUAUGCUAAACACUUACAACUGUUUGCAGAGGAAACUGAGACUUCAUAGCUAUGUCUCAGUCUCAUCUGCAAAGAAGUAAGUGCUUUGCCAAGCCCCUUGAAGGACGG
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Structure
        10          20        30        40        50        60 
GCUUCUCUCUCAUAUAU--| U  A       AA  GU       G  A       CUUCAU 
                   GC AA CACUUAC  CU  UUGCAGA GA ACUGAGA      \
                   CG UU GUGAAUG  GA  AACGUCU CU UGACUCU      A
GGCAGGAAGUUCCCCGAAC^ U  C       AA  --       A  C       GUAUCG 
 .       110       100        90          80        70
Deep sequencing
Go to detailed chart
CommentNot in assembly but in trace archive.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-452-v1_5p
mirBase accessionMIMAT0035748
Sequence 
0- AACUGUUUGCAGAGGAAACUGAGA -24
Get sequence
Proposed targets TargetScanVert: rno-miR-452-5p
miRDB: MIMAT0035748
Co-mature sequence

Rno-Mir-452-v1_3p
mirBase accessionMIMAT0035749
Sequence 
39- UCAGUCUCAUCUGCAAAGAAGU -61
Get sequence
Proposed targets TargetScanVert: rno-miR-452-3p
miRDB: MIMAT0035749
Variant

Rno-Mir-452-v2
Seed GUUUGCA
Precursor
(pre-Mir +30nt flank)		 
UCUCUCUCAUAUAUGCUAAACACUUACAACUGUUUGCAGAGGAAACUGAGACUUCAUAGCUAUGUCUCAGUCUCAUCUGCAAAGAAGUAAGUGCUUUGCCAAGCCCCUUGAAGGACG
Get precursor sequence
Structure
        10        20            30        40        50        
UCUCUCUCAUAUAUGCUAAA----|      AA  GU       G  A        UUCAU 
                        CACUUAC  CU  UUGCAGA GA ACUGAGAC     \
                        GUGAAUG  GA  AACGUCU CU UGACUCUG     A
GCAGGAAGUUCCCCGAACCGUUUC^      AA  --       A  C        UAUCG 
     110       100        90          80        70        60
Deep sequencing
Go to detailed chart
CommentNot in assembly but in trace archive.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-452-v2_5p
mirBase accessionMIMAT0035748
Sequence 
0- UGUUUGCAGAGGAAACUGAGAC -22
Get sequence
Proposed targets TargetScanVert: rno-miR-452-5p
miRDB: MIMAT0035748
Star sequence

Rno-Mir-452-v2_3p*
mirBase accessionMIMAT0035749
Sequence 
35- CUCAGUCUCAUCUGCAAAGAAG -57
Get sequence
Proposed targets TargetScanVert: rno-miR-452-3p
miRDB: MIMAT0035749