MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-452

Family name MIR-452 (all species)
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-452
Paralogues
Orthologues Bta-Mir-452-v1  Cja-Mir-452-v1  Cpo-Mir-452-v1  Ete-Mir-452-v1  Hsa-Mir-452-v1  Laf-Mir-452  Mml-Mir-452-v1  Mmr-Mir-452-v1  Mmu-Mir-452-v1  Ocu-Mir-452-v1  Pab-Mir-452-v1  Rno-Mir-452-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(canFam3_add)		 chrX: 119926390-119926450 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-452-v1)		 Mir-224 chrX: 119925345-119925413 [-] UCSC Ensembl
Mir-452-v1 chrX: 119926390-119926450 [-] UCSC Ensembl
Mir-452-v2 chrX: 119926391-119926447 [-] UCSC Ensembl
Variant

Cfa-Mir-452-v1
Seed ACUGUUU
Precursor
(pre-Mir +30nt flank)		 
ACUCCUGUCUUGGAAAUGCUAAGCACUUACAACUGUUUGCAGAGGAAACUGAGACUUUGUAACUACAUCUCAGUCUCAUCUGCAAAGAAGUAAGUGCUUUGCCAAGUCCCUCAGAGGACAG
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Structure
        10          20        30        40        50        60 
ACUCCUGUCUUGGAAAU--| U          AA  GU       G  A       CUUUGU 
                   GC AAGCACUUAC  CU  UUGCAGA GA ACUGAGA      \
                   CG UUCGUGAAUG  GA  AACGUCU CU UGACUCU      A
GACAGGAGACUCCCUGAAC^ U          AA  --       A  C       ACAUCA 
 .       110       100        90          80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-452-v1_5p
mirBase accessionMIMAT0009900
Sequence 
0- AACUGUUUGCAGAGGAAACUGAGA -24
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Proposed targets TargetScanVert: cfa-miR-452
miRDB: MIMAT0009900
Co-mature sequence

Cfa-Mir-452-v1_3p
mirBase accessionNone
Sequence 
39- UCAGUCUCAUCUGCAAAGAAGU -61
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Variant

Cfa-Mir-452-v2
Seed GUUUGCA
Precursor
(pre-Mir +30nt flank)		 
CCUGUCUUGGAAAUGCUAAGCACUUACAACUGUUUGCAGAGGAAACUGAGACUUUGUAACUACAUCUCAGUCUCAUCUGCAAAGAAGUAAGUGCUUUGCCAAGUCCCUCAGAGGACA
Get precursor sequence
Structure
        10            20        30        40        50        
CCUGUCUUGGAAAUGCU----|         AA  GU       G  A       CUUUGU 
                     AAGCACUUAC  CU  UUGCAGA GA ACUGAGA      \
                     UUCGUGAAUG  GA  AACGUCU CU UGACUCU      A
ACAGGAGACUCCCUGAACCGU^         AA  --       A  C       ACAUCA 
     110       100        90          80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-452-v2_5p
mirBase accessionMIMAT0009900
Sequence 
0- UGUUUGCAGAGGAAACUGAGA -21
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Proposed targets TargetScanVert: cfa-miR-452
miRDB: MIMAT0009900
Star sequence

Cfa-Mir-452-v2_3p*
mirBase accessionNone
Sequence 
36- UCAGUCUCAUCUGCAAAGAAG -57
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