MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-452

Family name MIR-452 (all species)
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-452-v1  Cfa-Mir-452-v1  Cpo-Mir-452-v1  Ete-Mir-452-v1  Hsa-Mir-452-v1  Laf-Mir-452  Mml-Mir-452-v1  Mmr-Mir-452-v1  Mmu-Mir-452-v1  Ocu-Mir-452-v1  Pab-Mir-452-v1  Rno-Mir-452-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021937.1: 143634333-143634393 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-452-v1)		 Mir-224 CM021937.1: 143633283-143633351 [-] UCSC Ensembl
Mir-452-v1 CM021937.1: 143634333-143634393 [-] UCSC Ensembl
Mir-452-v2 CM021937.1: 143634334-143634390 [-] UCSC Ensembl
Variant

Cja-Mir-452-v1
Seed ACUGUUU
Precursor
(pre-Mir +30nt flank)		 
GCUCCUGACUUCUAAUUGCUAAGCACUUACAACUGUUUGCAGAGGAAACUGAGACUUUGUAACUAUGUCUCAGUCUUAUCUGCAAAGAAGUAAGUGCUUUGCCAAGCCCCUUGAGAGAUUA
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Structure
        10          20        30        40        50        60 
GCUCCUGACUUCUAAUU--| U          AA  GU       G  A       CUUUGU 
                   GC AAGCACUUAC  CU  UUGCAGA GA ACUGAGA      \
                   CG UUCGUGAAUG  GA  AACGUCU UU UGACUCU      A
AUUAGAGAGUUCCCCGAAC^ U          AA  --       A  C       GUAUCA 
 .       110       100        90          80        70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Cja-Mir-452-v1_5p
mirBase accessionNone
Sequence 
0- AACUGUUUGCAGAGGAAACUGAGA -24
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Star sequence

Cja-Mir-452-v1_3p* (predicted)
mirBase accessionNone
Sequence 
39- UCAGUCUUAUCUGCAAAGAAGU -61
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Variant

Cja-Mir-452-v2
Seed GUUUGCA
Precursor
(pre-Mir +30nt flank)		 
CCUGACUUCUAAUUGCUAAGCACUUACAACUGUUUGCAGAGGAAACUGAGACUUUGUAACUAUGUCUCAGUCUUAUCUGCAAAGAAGUAAGUGCUUUGCCAAGCCCCUUGAGAGAUU
Get precursor sequence
Structure
        10            20        30        40        50        
CCUGACUUCUAAUUGCU----|         AA  GU       G  A        UUUGU 
                     AAGCACUUAC  CU  UUGCAGA GA ACUGAGAC     \
                     UUCGUGAAUG  GA  AACGUCU UU UGACUCUG     A
UUAGAGAGUUCCCCGAACCGU^         AA  --       A  C        UAUCA 
     110       100        90          80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Cja-Mir-452-v2_5p
mirBase accessionNone
Sequence 
0- UGUUUGCAGAGGAAACUGAGAC -22
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Star sequence

Cja-Mir-452-v2_3p* (predicted)
mirBase accessionNone
Sequence 
35- CUCAGUCUUAUCUGCAAAGAAG -57
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