MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-1912

Family name MIR-1912 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-1912
Paralogues
Orthologues Bta-Mir-1912  Cfa-Mir-1912  Cja-Mir-1912  Cpo-Mir-1912  Eca-Mir-1912  Ete-Mir-1912  Hsa-Mir-1912  Laf-Mir-1912  Mml-Mir-1912  Mmr-Mir-1912  Mmu-Mir-1912  Ocu-Mir-1912  Pab-Mir-1912 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)		 chrX: 118130668-118130726 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1912)		 Mir-1912 chrX: 118130668-118130726 [+] UCSC Ensembl
Mir-1264 chrX: 118131824-118131886 [+] UCSC Ensembl
Seed ACAGAAC
Precursor
(pre-Mir +30nt flank)		 
CAUACCACAAGCAUACUAGUCUCUAGGAUGUGCUCAUUGCAUGGGCUAUGUAGAUUUCUAUUUAAUACACAGAACAUGCAGUGAGAACUUGAUAGAGAUUGGAAGACAUCCAGAAGAAU
Get precursor sequence
Structure
        10          20        30        40        50         
CAUACCACAAGCAUACU--|       GGAU  G           GG  A    GAUUUC 
                   AGUCUCUA    GU CUCAUUGCAUG  CU UGUA      \
                   UUAGAGAU    CA GAGUGACGUAC  GA ACAU      U
UAAGAAGACCUACAGAAGG^       AGUU  A           AA  C    AAUUUA 
       110       100        90        80        70        60
Deep sequencing
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CommentThe Drosha cut is shifted -2 nt relative to the other annotated eutherians.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Star sequence

Rno-Mir-1912_5p* (predicted)
mirBase accessionMIMAT0017864
Sequence 
0- UGCUCAUUGCAUGGGCUAUGUA -22
Get sequence
Proposed targets TargetScanVert: rno-miR-1912-5p
miRDB: MIMAT0017864
Mature sequence

Rno-Mir-1912_3p
mirBase accessionMIMAT0017865
Sequence 
37- CACAGAACAUGCAGUGAGAACU -59
Get sequence
Proposed targets TargetScanVert: rno-miR-1912-3p
miRDB: MIMAT0017865