Mir-92-o99

MirGeneDB ID

Pve-Mir-92-o99

Family name

MIR-92 (all species)

Species

Vernerds tusk shell (Pictodentalium vernedei)

MiRBase ID

Paralogues

Pve-Mir-92-o98 Pve-Mir-92-o100 Pve-Mir-92-o101 Pve-Mir-92-o102

Orthologues

Asu-Mir-92 Cel-Mir-92 Esc-Mir-92 Gsp-Mir-92 Hmi-Mir-92 Isc-Mir-92 Obi-Mir-92 Sme-Mir-92

Node of Origin (locus)

Dentaliidae

Node of Origin (family)

Bilateria

Genome context
(Pve_genome_chr_only)

Pve_Chr5: 212132835-212132894 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-92-o99)

Mir-92-o101 Pve_Chr5: 212132207-212132264 [+] Ensembl
Mir-92-o100 Pve_Chr5: 212132384-212132441 [+] Ensembl
Mir-92-o99 Pve_Chr5: 212132835-212132894 [+] Ensembl
Mir-92-o98 Pve_Chr5: 212134936-212134993 [+] Ensembl

Seed

AUUGCAC

Precursor
(pre-Mir +30nt flank)

ACCUAAGGUUGUGAAUUUUGGAAGACUGAUCAGUCGAGACAGGUGCAUCGUAUUUGUUUCAUAUAUCAAAUUGCACUCGUCCCGGCCUGCCUAGUUUUCUCAAGCGGCGGCAAAGUACAC

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Structure

        10        20         30         40        50         
ACCUAAGGUUGUGAAUUU  -        AU  -|   A   AG     UCGUAUUUGUU 
                  UG GAAGACUG  CA GUCG GAC  GUGCA           U
                  AC CUUUUGAU  GU CGGC CUG  CACGU           C
CACAUGAAACGGCGGCGA  U        CC  C^   C   CU     UAAACUAUAUA 
.       110       100        90        80        70        60

Deep sequencing

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Comment

It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as oPveans pending additional data.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Pve-Mir-92-o99_5p* (predicted)

mirBase accession

None

Sequence

0- CAGUCGAGACAGGUGCAUCGUA -22

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Mature sequence

Pve-Mir-92-o99_3p

mirBase accession

None

Sequence

38- AAUUGCACUCGUCCCGGCCUGC -60

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