Mir-92-o100

MirGeneDB ID

Pve-Mir-92-o100

Family name

MIR-92 (all species)

Species

Vernerds tusk shell (Pictodentalium vernedei)

MiRBase ID

Paralogues

Pve-Mir-92-o98 Pve-Mir-92-o99 Pve-Mir-92-o101 Pve-Mir-92-o102

Orthologues

Asu-Mir-92 Cel-Mir-92 Esc-Mir-92 Gsp-Mir-92 Hmi-Mir-92 Isc-Mir-92 Obi-Mir-92 Sme-Mir-92

Node of Origin (locus)

Dentaliidae

Node of Origin (family)

Bilateria

Genome context
(Pve_genome_chr_only)

Pve_Chr5: 212132384-212132441 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-92-o100)

Mir-92-o101 Pve_Chr5: 212132207-212132264 [+] Ensembl
Mir-92-o100 Pve_Chr5: 212132384-212132441 [+] Ensembl
Mir-92-o99 Pve_Chr5: 212132835-212132894 [+] Ensembl
Mir-92-o98 Pve_Chr5: 212134936-212134993 [+] Ensembl

Seed

AUUGCAC

Precursor
(pre-Mir +30nt flank)

GUCUUCACAUGUUUUCCAGCUUCGCGUGACAGACCGAGUGAGUGUAAUCGGUUGUAUCUUUAUUCCAAUUGCACUCGUCCCGGCCUGCCUCGAGGGGUCGUUACCUGCAGUGUGGAAU

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Structure

        10          20        30         40        50        
GUCUUCACAUGUUUUCCA--     G  UGA   A   AG-|         C  UUGUAU 
                    GCUUC CG   CAG CCG   UGAGUGUAAU GG      \
                    UGGGG GC   GUC GGC   GCUCACGUUA CC      C
UAAGGUGUGACGUCCAUUGC     A  UCC   C   CCU^         A  UUAUUU 
      110       100        90        80        70        60

Deep sequencing

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Comment

It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as oPveans pending additional data.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Pve-Mir-92-o100_5p*

mirBase accession

None

Sequence

0- AGACCGAGUGAGUGUAAUCGG -21

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Mature sequence

Pve-Mir-92-o100_3p

mirBase accession

None

Sequence

36- AAUUGCACUCGUCCCGGCCUGC -58

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