MirGeneDB 2.1

MirGeneDB ID

Pma-Mir-203-o2-v1

Family name MIR-203 (all species)
Seed UGAAAUG
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-203b
Paralogues Pma-Mir-203-o1  Pma-Mir-203-o2-v2  Pma-Mir-203-o3-v1  Pma-Mir-203-o3-v2 
Orthologues Dre-Mir-203-P2-v1  Dre-Mir-203-P2-v2  Gmo-Mir-203-P2-v1  Gmo-Mir-203-P2-v2  Lch-Mir-203  Mal-Mir-203-P2-v1  Mal-Mir-203-P2-v2  Spt-Mir-203  Tni-Mir-203-P2-v1  Tni-Mir-203-P2-v2 
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)
NC_046085.1: 5367436-5367495 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-203-o2-v1)
Mir-203-o2-v1 NC_046085.1: 5367436-5367495 [-] UCSC Ensembl
Mir-203-o2-v2 NC_046085.1: 5367436-5367495 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACGACCGGAUUUGCCAUGGUUACCGAGUGCAGUGGUUCUAACCAGUUCAACAGUUCUCUACUGAAAUUGUGAAAUGUUUAGGACCACUUGACUCGGUAGCUCCAGUUCUGCCCCCCCACC
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Structure
        10          20        30        40        50          
ACGACCGGAUUUGCCAU--|          GC           C  G    A   UUCUCU 
                   GGUUACCGAGU  AGUGGUUCUAA CA UUCA CAG      \
                   UCGAUGGCUCA  UCACCAGGAUU GU AAGU GUU      A
CCACCCCCCCGUCUUGACC^          GU           U  A    -   AAAGUC 
.       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-203-o2-v1_5p*

mirBase accessionMIMAT0019513
Sequence
0- AGUGGUUCUAACCAGUUCAACAG -23
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Mature sequence

Pma-Mir-203-o2-v1_3p

mirBase accessionMIMAT0019514
Sequence
38- GUGAAAUGUUUAGGACCACUUG -60
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