MirGeneDB 3.0
MirGeneDB ID

Pdu-Mir-92-o138

Family name MIR-92 (all species)
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues Pdu-Mir-92-o136  Pdu-Mir-92-o137 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) P. dumerilii
Node of Origin (family) Bilateria
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)		 JAPTHN010000001.1: 194081867-194081923 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-92-o138)		 Mir-92-o138 JAPTHN010000001.1: 194081867-194081923 [-] Ensembl
Mir-92-o137 JAPTHN010000001.1: 194083611-194083668 [-] Ensembl
Mir-92-o136 JAPTHN010000001.1: 194084058-194084116 [-] Ensembl
Seed AUUGCAC
Precursor
(pre-Mir +30nt flank)		 
UGACAUUUUGACCCAUCAUUUCCCUGCAGUAGGUUGUGACAGCUGCAAUAUGGUCUUUACAAUCCAAUUGCACUUGUCCCGGCCUGCUGGACUAUGAAAUGAACCCGGCCUAGGAUG
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Structure
        10        20          30        40        50        
UGACAUUUUGACCCAUCAUUUCCCUG--|         U     C      A   UCUU 
                            CAGUAGGUUG GACAG UGCAAU UGG    U
                            GUCGUCCGGC CUGUU ACGUUA ACC    A
GUAGGAUCCGGCCCAAGUAAAGUAUCAG^         C     C      -   UAAC 
     110       100        90        80        70         60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU No
MotifsNo
Tissue expression
- +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Star sequence

Pdu-Mir-92-o138_5p*
mirBase accessionNone
Sequence 
0- AGGUUGUGACAGCUGCAAUAUGG -23
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Mature sequence

Pdu-Mir-92-o138_3p
mirBase accessionNone
Sequence 
35- AAUUGCACUUGUCCCGGCCUGC -57
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