MirGeneDB 3.0
MirGeneDB ID

Pdu-Mir-92-o136

Family name MIR-92 (all species)
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues Pdu-Mir-92-o137  Pdu-Mir-92-o138 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) P. dumerilii
Node of Origin (family) Bilateria
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)		 JAPTHN010000001.1: 194084058-194084116 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-92-o136)		 Mir-92-o138 JAPTHN010000001.1: 194081867-194081923 [-] Ensembl
Mir-92-o137 JAPTHN010000001.1: 194083611-194083668 [-] Ensembl
Mir-92-o136 JAPTHN010000001.1: 194084058-194084116 [-] Ensembl
Seed AUUGCAC
Precursor
(pre-Mir +30nt flank)		 
CUGGGUGAGUUAAUUUCAGGGUUGUCUGGUGGGUCGUGAUUUGUGCACUUUUGUUGUCACUCAGUCAAAUUGCACUUGUCCCGGCCUGCCAGCUGCUCACUGACUUCACUCAAGACAAG
Get precursor sequence
Structure
        10           20        30        40        50         
CUGGGUGAGUUAAUUUCA---|   U U    UG     U   UU     CU    UUGUC 
                     GGGU G CUGG  GGUCG GAU  GUGCA  UUUG     A
                     CUCG C GACC  CCGGC CUG  CACGU  AAAC     C
GAACAGAACUCACUUCAGUCA^   U -    GU     C   UU     U-    UGACU 
       110       100         90        80        70         60
Deep sequencing
Go to detailed chart
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU No
MotifsNo
Tissue expression
- +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Star sequence

Pdu-Mir-92-o136_5p*
mirBase accessionNone
Sequence 
0- GGGUCGUGAUUUGUGCACUUUUG -23
Get sequence
Mature sequence

Pdu-Mir-92-o136_3p
mirBase accessionNone
Sequence 
37- AAUUGCACUUGUCCCGGCCUGC -59
Get sequence