| MirGeneDB ID | Pab-Mir-652 |
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| Family name |
MIR-652 (all species) |
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| Species |
Sumatran orangutan (Pongo abelii) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Bta-Mir-652
Cfa-Mir-652
Cja-Mir-652
Cpo-Mir-652
Dno-Mir-652
Eca-Mir-652
Ete-Mir-652
Hsa-Mir-652
Laf-Mir-652
Mml-Mir-652
Mmr-Mir-652
Mmu-Mir-652
Ocu-Mir-652
Rno-Mir-652
|
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| Node of Origin (locus) |
Eutheria
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| Node of Origin (family) |
Eutheria
|
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Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054702.2: 115895775-115895836 [+]
UCSC
Ensembl
|
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| Seed |
AUGGCGC |
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Precursor
(pre-Mir +30nt flank) |
GCAGGGCCGCCACGCAUGGCUAUGCACUGCACAACCCUAGGAGAGGGUGCCAUUCACAUAGACUAUAAUUGAAUGGCGCCACUAGGGUUGUGCAGUGCACAACCUACACAACUGUACUCGGC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GCAGGGCCGCCACGCAU-| CUA GAGAG CACAUAGA
GG UGCACUGCACAACCCUAG GGUGCCAUU \
CC ACGUGACGUGUUGGGAUC CCGCGGUAA C
CGGCUCAUGUCAACACAU^ AAC A---- GUUAAUAU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Yes
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Pab-Mir-652_5p* |
| mirBase accession | None |
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| Sequence |
0- ACAACCCUAGGAGAGGGUGCCAUU -24
Get sequence
|
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| Mature sequence |
Pab-Mir-652_3p |
| mirBase accession | None |
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| Sequence |
41- AAUGGCGCCACUAGGGUUGUG -62
Get sequence
|
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